Human Gene GPR141 (uc003tfm.1)
  Description: Homo sapiens G protein-coupled receptor 141 (GPR141), mRNA.
RefSeq Summary (NM_181791): GPR141 is a member of the rhodopsin family of G protein-coupled receptors (GPRs) (Fredriksson et al., 2003 [PubMed 14623098]).[supplied by OMIM, Mar 2008].
Transcript (Including UTRs)
   Position: hg19 chr7:37,779,996-37,780,913 Size: 918 Total Exon Count: 1 Strand: +
Coding Region
   Position: hg19 chr7:37,779,996-37,780,913 Size: 918 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:37,779,996-37,780,913)mRNA (may differ from genome)Protein (305 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkHGNCHPRDLynxMGIneXtProt
OMIMPubMedTreefamUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GP141_HUMAN
DESCRIPTION: RecName: Full=Probable G-protein coupled receptor 141; AltName: Full=G-protein coupled receptor PGR13;
FUNCTION: Orphan receptor.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): GPR141
CDC HuGE Published Literature: GPR141
Positive Disease Associations: Diabetic Nephropathies , Platelet Aggregation
Related Studies:
  1. Diabetic Nephropathies
    , , . [PubMed 0]
  2. Platelet Aggregation
    Qiong Yang et al. BMC medical genetics 2007, Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study., BMC medical genetics. [PubMed 17903294]
    Using genome-wide association methodology, we have successfully identified a SNP in complete LD with a sequence variant previously shown to be strongly associated with factor VII, providing proof of principle for this approach. Further study of additional strongly associated SNPs and linked regions may identify novel variants that influence the inter-individual variability in hemostatic factors and hematological phenotypes.
  3. Platelet Aggregation
    Qiong Yang et al. BMC medical genetics 2007, Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study., BMC medical genetics. [PubMed 17903294]
    Using genome-wide association methodology, we have successfully identified a SNP in complete LD with a sequence variant previously shown to be strongly associated with factor VII, providing proof of principle for this approach. Further study of additional strongly associated SNPs and linked regions may identify novel variants that influence the inter-individual variability in hemostatic factors and hematological phenotypes.
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-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.10 RPKM in Whole Blood
Total median expression: 8.95 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_supfam

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on Q7Z602
FrontTopSide
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologNo orthologNo ortholog
      
      
  Ensembl   
  Protein Sequence   
  Alignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity

Biological Process:
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  KJ896133 - Synthetic construct Homo sapiens clone ccsbBroadEn_05527 GPR141 gene, encodes complete protein.
AB529245 - Synthetic construct DNA, clone: pF1KE0810, Homo sapiens GPR141 gene for G protein-coupled receptor 141, without stop codon, in Flexi system.
AY288420 - Homo sapiens G protein-coupled receptor 141 (GPR141) mRNA, complete cds.
BC120951 - Homo sapiens G protein-coupled receptor 141, mRNA (cDNA clone MGC:149430 IMAGE:40115152), complete cds.
BC120952 - Homo sapiens G protein-coupled receptor 141, mRNA (cDNA clone MGC:149431 IMAGE:40115153), complete cds.
AY255538 - Homo sapiens G protein-coupled receptor PGR13 mRNA, partial cds.

-  Other Names for This Gene
  Alternate Gene Symbols: A4D1X7, GP141_HUMAN, NM_181791, NP_861456, PGR13, Q0VAR5, Q7Z602, Q86SP3
UCSC ID: uc003tfm.1
RefSeq Accession: NM_181791
Protein: Q7Z602 (aka GP141_HUMAN)
CCDS: CCDS5451.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_181791.1
exon count: 1CDS single in 3' UTR: no RNA size: 918
ORF size: 918CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1936.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.