Human Gene PI4KAP1 (uc010gsg.2)
  Description: Homo sapiens phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1 (PI4KAP1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr22:20,383,731-20,400,817 Size: 17,087 Total Exon Count: 16 Strand: -


Page IndexSequence and LinksPrimersMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:20,383,731-20,400,817)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerGeneNetworkH-INVHGNCLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK002141 - Homo sapiens cDNA FLJ11279 fis, clone PLACE1009444, highly similar to PHOSPHATIDYLINOSITOL 4-KINASE ALPHA (EC 2.7.1.67).
AK024034 - Homo sapiens cDNA FLJ13972 fis, clone Y79AA1001548, highly similar to PHOSPHATIDYLINOSITOL 4-KINASE ALPHA (EC 2.7.1.67).
CR456378 - Homo sapiens Em:AP000557.3 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.Em:AP000557.3.V6).
JD391531 - Sequence 372555 from Patent EP1572962.
BC131538 - Homo sapiens cDNA clone IMAGE:40084377.
JD260902 - Sequence 241926 from Patent EP1572962.
BC141652 - Synthetic construct Homo sapiens clone IMAGE:100000342, MGC:164686 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 2 (PI4KAP2) mRNA, encodes complete protein.
CU013083 - Homo sapiens Em:AP000557.C22.3, mRNA (cDNA clone IMAGE:100000342), complete cds, with stop codon, in Gateway system.
BC139841 - Homo sapiens similar to phosphatidylinositol 4-kinase alpha, mRNA (cDNA clone IMAGE:100000246), partial cds.
CU013371 - Homo sapiens Em:AP000557.C22.3, mRNA (cDNA clone IMAGE:100000246), complete cds, without stop codon, in Gateway system.
JD200928 - Sequence 181952 from Patent EP1572962.
AK292695 - Homo sapiens cDNA FLJ78725 complete cds.
AK297163 - Homo sapiens cDNA FLJ59121 complete cds, highly similar to Phosphatidylinositol 4-kinase alpha (EC 2.7.1.67).
BC072398 - Homo sapiens phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1, mRNA (cDNA clone IMAGE:5770421).
AK126860 - Homo sapiens cDNA FLJ44912 fis, clone BRAMY3009491, highly similar to Phosphatidylinositol 4-kinase alpha (EC 2.7.1.67).
AK096724 - Homo sapiens cDNA FLJ39405 fis, clone PLACE6012936, highly similar to PHOSPHATIDYLINOSITOL 4-KINASE ALPHA (EC 2.7.1.67).
CU687216 - Synthetic construct Homo sapiens gateway clone IMAGE:100022888 5' read PI4KAP1 mRNA.
KJ901013 - Synthetic construct Homo sapiens clone ccsbBroadEn_10407 PI4KAP1 gene, encodes complete protein.
KJ905663 - Synthetic construct Homo sapiens clone ccsbBroadEn_15314 PI4KAP1 gene, encodes complete protein.
DI487259 - KR 1020100056450-A/355: DSRNA FOR TREATING VIRAL INFECTION.
DI487263 - KR 1020100056450-A/359: DSRNA FOR TREATING VIRAL INFECTION.
DI487242 - KR 1020100056450-A/338: DSRNA FOR TREATING VIRAL INFECTION.
DI487301 - KR 1020100056450-A/397: DSRNA FOR TREATING VIRAL INFECTION.
DI487304 - KR 1020100056450-A/400: DSRNA FOR TREATING VIRAL INFECTION.
DI487307 - KR 1020100056450-A/403: DSRNA FOR TREATING VIRAL INFECTION.
HV593195 - JP 2010532163-A/316: dsRNA for treating viral infection.
HW663743 - JP 2013212113-A/212: dsRNA for treating viral infection.
JD275230 - Sequence 256254 from Patent EP1572962.
JD528084 - Sequence 509108 from Patent EP1572962.
JD225880 - Sequence 206904 from Patent EP1572962.
DI487258 - KR 1020100056450-A/354: DSRNA FOR TREATING VIRAL INFECTION.
JD503530 - Sequence 484554 from Patent EP1572962.
DI487232 - KR 1020100056450-A/328: DSRNA FOR TREATING VIRAL INFECTION.

-  Other Names for This Gene
  Alternate Gene Symbols: CR456378
UCSC ID: uc010gsg.2
RefSeq Accession: NR_003563

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: CR456378.1
exon count: 16CDS single in 3' UTR: no RNA size: 2018
ORF size: 0CDS single in intron: no Alignment % ID: 99.60
txCdsPredict score: 133.50frame shift in genome: no % Coverage: 96.78
has start codon: no stop codon in genome: no # of Alignments: 2
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.