Human Gene C12orf76 (uc001tqe.2)
Description: Homo sapiens chromosome 12 open reading frame 76 (C12orf76), mRNA.
Transcript (Including UTRs)
Position: hg19 chr12:110,478,983-110,511,439 Size: 32,457 Total Exon Count: 4 Strand: -
Coding Region
Position: hg19 chr12:110,480,179-110,496,889 Size: 16,711 Coding Exon Count: 3
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
BC046185 - Homo sapiens FLJ40142 protein, mRNA (cDNA clone IMAGE:5416162), partial cds.AK097461 - Homo sapiens cDNA FLJ40142 fis, clone TESTI2012922.BC133010 - Homo sapiens FLJ40142 protein, mRNA (cDNA clone MGC:164641 IMAGE:40147032), complete cds.BC133012 - Homo sapiens FLJ40142 protein, mRNA (cDNA clone MGC:164643 IMAGE:40147034), complete cds.BC144372 - Homo sapiens cDNA clone IMAGE:9052893.KJ900725 - Synthetic construct Homo sapiens clone ccsbBroadEn_10119 C12orf76 gene, encodes complete protein.AK094845 - Homo sapiens cDNA FLJ37526 fis, clone BRCAN2010374, weakly similar to P2X PURINOCEPTOR 7.AK021447 - Homo sapiens cDNA FLJ11385 fis, clone HEMBA1000520.BC041968 - Homo sapiens FLJ40142 protein, mRNA (cDNA clone IMAGE:5302663).AF086409 - Homo sapiens full length insert cDNA clone ZD76H04.JD533419 - Sequence 514443 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: BC046185, NM_207435, NP_997318, uc001tqe.1UCSC ID: uc001tqe.2RefSeq Accession: NM_207435
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
BC046185.1
exon count:
4 CDS single in 3' UTR:
no
RNA size:
1788
ORF size:
291 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
693.50 frame shift in genome:
no
% Coverage:
98.60
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.