Human Gene TDRG1 (uc003opg.2) Description and Page Index
  Description: Homo sapiens testis development related 1 (non-protein coding) (TDRG1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr6:40,346,163-40,347,631 Size: 1,469 Total Exon Count: 2 Strand: +


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:40,346,163-40,347,631)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerGeneNetworkHGNCLynxPubMed
Stanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 66.03 RPKM in Testis
Total median expression: 71.46 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC042123 - Homo sapiens cDNA clone IMAGE:5266659.
BC033995 - Homo sapiens cDNA clone IMAGE:5297318.
DQ601689 - Homo sapiens piRNA piR-39755, complete sequence.
DQ601707 - Homo sapiens piRNA piR-39773, complete sequence.
DQ575359 - Homo sapiens piRNA piR-43471, complete sequence.
DQ575360 - Homo sapiens piRNA piR-43472, complete sequence.
DQ575361 - Homo sapiens piRNA piR-43473, complete sequence.
DQ571907 - Homo sapiens piRNA piR-32019, complete sequence.
BC071820 - Homo sapiens cDNA clone IMAGE:6592949, partial cds.
DQ168992 - Homo sapiens testis development related protein 1 (TDRG1) mRNA, complete cds.
DQ570860 - Homo sapiens piRNA piR-30972, complete sequence.
DQ596851 - Homo sapiens piRNA piR-34917, complete sequence.
DQ573587 - Homo sapiens piRNA piR-41699, complete sequence.
DQ578588 - Homo sapiens piRNA piR-46700, complete sequence.
DQ569941 - Homo sapiens piRNA piR-30053, complete sequence.
DQ570196 - Homo sapiens piRNA piR-30308, complete sequence.
DQ571612 - Homo sapiens piRNA piR-31724, complete sequence.
DQ578929 - Homo sapiens piRNA piR-47041, complete sequence.
DQ578930 - Homo sapiens piRNA piR-47042, complete sequence.
DQ578934 - Homo sapiens piRNA piR-47046, complete sequence.
DQ578931 - Homo sapiens piRNA piR-47043, complete sequence.
DQ578932 - Homo sapiens piRNA piR-47044, complete sequence.
DQ578933 - Homo sapiens piRNA piR-47045, complete sequence.
DQ600677 - Homo sapiens piRNA piR-38743, complete sequence.
DQ570697 - Homo sapiens piRNA piR-30809, complete sequence.
DQ595378 - Homo sapiens piRNA piR-61490, complete sequence.
DQ595379 - Homo sapiens piRNA piR-61491, complete sequence.
DQ587950 - Homo sapiens piRNA piR-55062, complete sequence.
DQ587951 - Homo sapiens piRNA piR-55063, complete sequence.
DQ587952 - Homo sapiens piRNA piR-55064, complete sequence.
DQ587953 - Homo sapiens piRNA piR-55065, complete sequence.
DQ597375 - Homo sapiens piRNA piR-35441, complete sequence.
DQ593071 - Homo sapiens piRNA piR-33183, complete sequence.
DQ601553 - Homo sapiens piRNA piR-39619, complete sequence.
DQ591882 - Homo sapiens piRNA piR-58994, complete sequence.
DQ600923 - Homo sapiens piRNA piR-38989, complete sequence.
DQ600323 - Homo sapiens piRNA piR-38389, complete sequence.
DQ600324 - Homo sapiens piRNA piR-38390, complete sequence.
DQ587501 - Homo sapiens piRNA piR-54613, complete sequence.
DQ590635 - Homo sapiens piRNA piR-57747, complete sequence.
DQ586681 - Homo sapiens piRNA piR-53793, complete sequence.
DQ594318 - Homo sapiens piRNA piR-60430, complete sequence.
DQ594412 - Homo sapiens piRNA piR-60524, complete sequence.
DQ575236 - Homo sapiens piRNA piR-43348, complete sequence.
DQ585982 - Homo sapiens piRNA piR-53094, complete sequence.
DQ585983 - Homo sapiens piRNA piR-53095, complete sequence.
DQ571664 - Homo sapiens piRNA piR-31776, complete sequence.
DQ584730 - Homo sapiens piRNA piR-51842, complete sequence.
DQ584731 - Homo sapiens piRNA piR-51843, complete sequence.
DQ576249 - Homo sapiens piRNA piR-44361, complete sequence.
DQ576873 - Homo sapiens piRNA piR-44985, complete sequence.
DQ576874 - Homo sapiens piRNA piR-44986, complete sequence.
DQ601822 - Homo sapiens piRNA piR-39888, complete sequence.
DQ601823 - Homo sapiens piRNA piR-39889, complete sequence.
DQ578426 - Homo sapiens piRNA piR-46538, complete sequence.
DQ575647 - Homo sapiens piRNA piR-43759, complete sequence.
DQ589783 - Homo sapiens piRNA piR-56895, complete sequence.
DQ589784 - Homo sapiens piRNA piR-56896, complete sequence.
DQ575292 - Homo sapiens piRNA piR-43404, complete sequence.
DQ575293 - Homo sapiens piRNA piR-43405, complete sequence.
DQ575220 - Homo sapiens piRNA piR-43332, complete sequence.
DQ575221 - Homo sapiens piRNA piR-43333, complete sequence.
DQ575222 - Homo sapiens piRNA piR-43334, complete sequence.
DQ575223 - Homo sapiens piRNA piR-43335, complete sequence.
DQ575224 - Homo sapiens piRNA piR-43336, complete sequence.
DQ575225 - Homo sapiens piRNA piR-43337, complete sequence.
DQ575226 - Homo sapiens piRNA piR-43338, complete sequence.
DQ582863 - Homo sapiens piRNA piR-32975, complete sequence.
DQ571108 - Homo sapiens piRNA piR-31220, complete sequence.
DQ597707 - Homo sapiens piRNA piR-35773, complete sequence.
DQ571146 - Homo sapiens piRNA piR-31258, complete sequence.
DQ571147 - Homo sapiens piRNA piR-31259, complete sequence.
DQ597768 - Homo sapiens piRNA piR-35834, complete sequence.
DQ597769 - Homo sapiens piRNA piR-35835, complete sequence.
DQ585396 - Homo sapiens piRNA piR-52508, complete sequence.
DQ584268 - Homo sapiens piRNA piR-51380, complete sequence.
DQ584265 - Homo sapiens piRNA piR-51377, complete sequence.
DQ584266 - Homo sapiens piRNA piR-51378, complete sequence.
DQ584267 - Homo sapiens piRNA piR-51379, complete sequence.
DQ596612 - Homo sapiens piRNA piR-34678, complete sequence.
DQ570986 - Homo sapiens piRNA piR-31098, complete sequence.
DQ582719 - Homo sapiens piRNA piR-32831, complete sequence.
DQ596339 - Homo sapiens piRNA piR-34405, complete sequence.
DQ582015 - Homo sapiens piRNA piR-32127, complete sequence.
DQ600440 - Homo sapiens piRNA piR-38506, complete sequence.
DQ592521 - Homo sapiens piRNA piR-59633, complete sequence.
DQ600441 - Homo sapiens piRNA piR-38507, complete sequence.
DQ600442 - Homo sapiens piRNA piR-38508, complete sequence.
DQ573246 - Homo sapiens piRNA piR-41358, complete sequence.
DQ587599 - Homo sapiens piRNA piR-54711, complete sequence.
DQ577596 - Homo sapiens piRNA piR-45708, complete sequence.
DQ577597 - Homo sapiens piRNA piR-45709, complete sequence.
DQ578567 - Homo sapiens piRNA piR-46679, complete sequence.
DQ574572 - Homo sapiens piRNA piR-42684, complete sequence.
DQ574573 - Homo sapiens piRNA piR-42685, complete sequence.
DQ585288 - Homo sapiens piRNA piR-52400, complete sequence.
DQ585289 - Homo sapiens piRNA piR-52401, complete sequence.
DQ585290 - Homo sapiens piRNA piR-52402, complete sequence.
JD361537 - Sequence 342561 from Patent EP1572962.
DQ578986 - Homo sapiens piRNA piR-47098, complete sequence.
DQ577939 - Homo sapiens piRNA piR-46051, complete sequence.
DQ582091 - Homo sapiens piRNA piR-32203, complete sequence.
DQ594626 - Homo sapiens piRNA piR-60738, complete sequence.
DQ601408 - Homo sapiens piRNA piR-39474, complete sequence.
DQ601409 - Homo sapiens piRNA piR-39475, complete sequence.
DQ575672 - Homo sapiens piRNA piR-43784, complete sequence.
DQ600128 - Homo sapiens piRNA piR-38194, complete sequence.
DQ600129 - Homo sapiens piRNA piR-38195, complete sequence.
DQ571414 - Homo sapiens piRNA piR-31526, complete sequence.
DQ591083 - Homo sapiens piRNA piR-58195, complete sequence.
DQ572529 - Homo sapiens piRNA piR-40641, complete sequence.
DQ578526 - Homo sapiens piRNA piR-46638, complete sequence.
DQ574563 - Homo sapiens piRNA piR-42675, complete sequence.
DQ574390 - Homo sapiens piRNA piR-42502, complete sequence.
DQ575942 - Homo sapiens piRNA piR-44054, complete sequence.
DQ601115 - Homo sapiens piRNA piR-39181, complete sequence.
DQ575648 - Homo sapiens piRNA piR-43760, complete sequence.
DQ588785 - Homo sapiens piRNA piR-55897, complete sequence.
DQ588786 - Homo sapiens piRNA piR-55898, complete sequence.
DQ590556 - Homo sapiens piRNA piR-57668, complete sequence.
DQ576610 - Homo sapiens piRNA piR-44722, complete sequence.
DQ601851 - Homo sapiens piRNA piR-39917, complete sequence.
DQ592481 - Homo sapiens piRNA piR-59593, complete sequence.
DQ599882 - Homo sapiens piRNA piR-37948, complete sequence.
DQ601354 - Homo sapiens piRNA piR-39420, complete sequence.
DQ591525 - Homo sapiens piRNA piR-58637, complete sequence.
DQ572237 - Homo sapiens piRNA piR-40349, complete sequence.
DQ572238 - Homo sapiens piRNA piR-40350, complete sequence.
DQ600816 - Homo sapiens piRNA piR-38882, complete sequence.
DQ600817 - Homo sapiens piRNA piR-38883, complete sequence.
JD261651 - Sequence 242675 from Patent EP1572962.
JD082111 - Sequence 63135 from Patent EP1572962.
DQ592835 - Homo sapiens piRNA piR-59947, complete sequence.
DQ592836 - Homo sapiens piRNA piR-59948, complete sequence.
DQ592837 - Homo sapiens piRNA piR-59949, complete sequence.
DQ592838 - Homo sapiens piRNA piR-59950, complete sequence.
DQ592839 - Homo sapiens piRNA piR-59951, complete sequence.
DQ593498 - Homo sapiens piRNA piR-33610, complete sequence.
JD110857 - Sequence 91881 from Patent EP1572962.
DQ586397 - Homo sapiens piRNA piR-53509, complete sequence.
DQ595399 - Homo sapiens piRNA piR-61511, complete sequence.
DQ572072 - Homo sapiens piRNA piR-40184, complete sequence.
DQ572413 - Homo sapiens piRNA piR-40525, complete sequence.
DQ575418 - Homo sapiens piRNA piR-43530, complete sequence.
DQ592295 - Homo sapiens piRNA piR-59407, complete sequence.
DQ592296 - Homo sapiens piRNA piR-59408, complete sequence.
JD360625 - Sequence 341649 from Patent EP1572962.
DQ575708 - Homo sapiens piRNA piR-43820, complete sequence.
DQ591273 - Homo sapiens piRNA piR-58385, complete sequence.
JD136857 - Sequence 117881 from Patent EP1572962.
DQ589310 - Homo sapiens piRNA piR-56422, complete sequence.
JD545711 - Sequence 526735 from Patent EP1572962.
DQ601913 - Homo sapiens piRNA piR-39979, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_024015
UCSC ID: uc003opg.2
RefSeq Accession: NR_024015

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_024015.1
exon count: 2CDS single in 3' UTR: no RNA size: 1197
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 387.00frame shift in genome: no % Coverage: 90.64
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.