The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse
Rat
Zebrafish
D. melanogaster
C. elegans
S. cerevisiae
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
Descriptions from all associated GenBank mRNAs
LF383950 - JP 2014500723-A/191453: Polycomb-Associated Non-Coding RNAs. AK312991 - Homo sapiens cDNA, FLJ93452, highly similar to Homo sapiens nucleoporin like 2 (NUPL2), mRNA. U97198 - Homo sapiens CG1 mRNA, complete cds. BC005327 - Homo sapiens nucleoporin like 2, mRNA (cDNA clone MGC:12413 IMAGE:3510844), complete cds. BC107583 - Homo sapiens nucleoporin like 2, mRNA (cDNA clone MGC:111148 IMAGE:6453869), complete cds. BT007409 - Homo sapiens nucleoporin-like protein 1 mRNA, complete cds. KJ902199 - Synthetic construct Homo sapiens clone ccsbBroadEn_11593 NUPL2 gene, encodes complete protein. AK298183 - Homo sapiens cDNA FLJ60750 complete cds, highly similar to Nucleoporin-like 2. BC039333 - Homo sapiens nucleoporin like 2, mRNA (cDNA clone IMAGE:5267926), complete cds. JD036344 - Sequence 17368 from Patent EP1572962. JD345681 - Sequence 326705 from Patent EP1572962. JD225364 - Sequence 206388 from Patent EP1572962. LF357825 - JP 2014500723-A/165328: Polycomb-Associated Non-Coding RNAs. AK124359 - Homo sapiens cDNA FLJ42368 fis, clone UTERU2029953. LF357829 - JP 2014500723-A/165332: Polycomb-Associated Non-Coding RNAs. MA619527 - JP 2018138019-A/191453: Polycomb-Associated Non-Coding RNAs. MA593402 - JP 2018138019-A/165328: Polycomb-Associated Non-Coding RNAs. MA593406 - JP 2018138019-A/165332: Polycomb-Associated Non-Coding RNAs.