Human Gene RP11-512M8.12 (uc010tab.2)
  Description: Homo sapiens diablo, IAP-binding mitochondrial protein (RP11-512M8.12), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA.
RefSeq Summary (NM_019887): This gene encodes an inhibitor of apoptosis protein (IAP)-binding protein. The encoded mitochondrial protein enters the cytosol when cells undergo apoptosis, and allows activation of caspases by binding to inhibitor of apoptosis proteins. Overexpression of the encoded protein sensitizes tumor cells to apoptosis. A mutation in this gene is associated with young-adult onset of nonsyndromic deafness-64. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, May 2013].
Transcript (Including UTRs)
   Position: hg19 chr12:122,692,209-122,712,068 Size: 19,860 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr12:122,692,928-122,710,561 Size: 17,634 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:122,692,209-122,712,068)mRNA (may differ from genome)Protein (239 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
H-INVHPRDLynxMGIneXtProtOMIM
PubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DBLOH_HUMAN
DESCRIPTION: RecName: Full=Diablo homolog, mitochondrial; AltName: Full=Direct IAP-binding protein with low pI; AltName: Full=Second mitochondria-derived activator of caspase; Short=Smac; Flags: Precursor;
FUNCTION: Promotes apoptosis by activating caspases in the cytochrome c/Apaf-1/caspase-9 pathway. Acts by opposing the inhibitory activity of inhibitor of apoptosis proteins (IAP). Inhibits the activity of BIRC6/bruce by inhibiting its binding to caspases. Isoform 3 attenuates the stability and apoptosis- inhibiting activity of XIAP/BIRC4 by promoting XIAP/BIRC4 ubiquitination and degradation through the ubiquitin-proteasome pathway. Isoform 3 also disrupts XIAP/BIRC4 interacting with processed caspase-9 and promotes caspase-3 activation. Isoform 1 is defective in the capacity to down-regulate the XIAP/BIRC4 abundance.
SUBUNIT: Homodimer. Interacts with NGFRAP1/BEX3 (By similarity). Interacts with BIRC2/c-IAP1, BIRC3/c-IAP2, XIAP/BIRC4, BIRC6/bruce and BIRC7/livin. Interacts with the monomeric and dimeric form of BIRC5/survivin.
INTERACTION: Q13490:BIRC2; NbExp=4; IntAct=EBI-517508, EBI-514538; Q13489:BIRC3; NbExp=2; IntAct=EBI-517508, EBI-517709; Q96CA5:BIRC7; NbExp=6; IntAct=EBI-517508, EBI-517623; P98170:XIAP; NbExp=7; IntAct=EBI-517508, EBI-517127; Q60989:Xiap (xeno); NbExp=3; IntAct=EBI-517508, EBI-517478;
SUBCELLULAR LOCATION: Mitochondrion. Note=Released into the cytosol when cells undergo apoptosis.
TISSUE SPECIFICITY: Ubiquitously expressed with highest expression in testis. Expression is also high in heart, liver, kidney, spleen, prostate and ovary. Low in brain, lung, thymus and peripheral blood leukocytes. Isoform 3 is ubiquitously expressed.
DOMAIN: The mature N-terminus mediates interaction with XIAP/BIRC4.
PTM: Ubiquitinated by BIRC7/livin.
DISEASE: Defects in DIABLO are the cause of deafness autosomal dominant type 64 (DFNA64) [MIM:614152]. DFNA64 is a form of non- syndromic sensorineural hearing loss. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.02 RPKM in Testis
Total median expression: 114.78 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -353.42805-0.439 Picture PostScript Text
3' UTR -248.70719-0.346 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015142 - Smac_DIABLO
IPR009062 - Smac_DIABLO-like

Pfam Domains:
PF09057 - Second Mitochondria-derived Activator of Caspases

SCOP Domains:
46984 - Smac/diablo

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1FEW - X-ray MuPIT 1G3F - NMR MuPIT 1G73 - X-ray MuPIT 1TW6 - X-ray MuPIT 1XB0 - X-ray MuPIT 1XB1 - X-ray MuPIT 3D9U - X-ray MuPIT 3UIH - X-ray MuPIT 3UIJ - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9NR28
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
 Protein SequenceProtein Sequence   
 AlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0006915 apoptotic process
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0008625 extrinsic apoptotic signaling pathway via death domain receptors
GO:0008635 activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c
GO:0043065 positive regulation of apoptotic process
GO:0097193 intrinsic apoptotic signaling pathway

Cellular Component:
GO:0005739 mitochondrion
GO:0005758 mitochondrial intermembrane space
GO:0005829 cytosol
GO:0009898 cytoplasmic side of plasma membrane
GO:0035631 CD40 receptor complex


-  Descriptions from all associated GenBank mRNAs
  AK057778 - Homo sapiens cDNA FLJ25049 fis, clone CBL04001, highly similar to Homo sapiens Smac mRNA; nuclear gene for mitochondrial product.
JD038011 - Sequence 19035 from Patent EP1572962.
JD154293 - Sequence 135317 from Patent EP1572962.
AK001399 - Homo sapiens cDNA FLJ10537 fis, clone NT2RP2001119, highly similar to Diablo homolog, mitochondrial precursor.
BC004417 - Homo sapiens diablo homolog (Drosophila), mRNA (cDNA clone IMAGE:3659131), partial cds.
AF262240 - Homo sapiens Smac mRNA, complete cds; nuclear gene for mitochondrial product.
AK222664 - Homo sapiens mRNA for diablo isoform 1 precursor variant, clone: CBL08562.
AK024768 - Homo sapiens cDNA: FLJ21115 fis, clone CAS05491.
BC095468 - Homo sapiens diablo homolog (Drosophila), mRNA (cDNA clone MGC:111372 IMAGE:30557745), complete cds.
BC046209 - Homo sapiens diablo homolog (Drosophila), mRNA (cDNA clone IMAGE:6187007).
BC011909 - Homo sapiens diablo homolog (Drosophila), mRNA (cDNA clone MGC:19863 IMAGE:4137792), complete cds.
AL833244 - Homo sapiens mRNA; cDNA DKFZp761B1220 (from clone DKFZp761B1220).
JD412048 - Sequence 393072 from Patent EP1572962.
JD061080 - Sequence 42104 from Patent EP1572962.
JD290665 - Sequence 271689 from Patent EP1572962.
JD499917 - Sequence 480941 from Patent EP1572962.
JD237643 - Sequence 218667 from Patent EP1572962.
JD299409 - Sequence 280433 from Patent EP1572962.
JD460434 - Sequence 441458 from Patent EP1572962.
JD432857 - Sequence 413881 from Patent EP1572962.
JD400991 - Sequence 382015 from Patent EP1572962.
JD459466 - Sequence 440490 from Patent EP1572962.
AF298770 - Homo sapiens Smac/DIABLO-S protein mRNA, complete cds.
JX679472 - Homo sapiens SMAC-epsilon (DIABLO) mRNA, complete cds, alternatively spliced.
AY313210 - Homo sapiens SMAC3 mRNA, complete cds; nuclear gene for mitochondrial product.
AK315629 - Homo sapiens cDNA, FLJ96714, Homo sapiens second mitochondria-derived activator of caspase(SMAC), nuclear gene encoding mitochondrial protein, transcriptvariant 1, mRNA.
KJ894334 - Synthetic construct Homo sapiens clone ccsbBroadEn_03728 DIABLO gene, encodes complete protein.
DQ893061 - Synthetic construct clone IMAGE:100005691; FLH193190.01X; RZPDo839D0878D diablo homolog (Drosophila) (DIABLO) gene, encodes complete protein.
DQ896313 - Synthetic construct Homo sapiens clone IMAGE:100010773; FLH193186.01L; RZPDo839D0868D diablo homolog (Drosophila) (DIABLO) gene, encodes complete protein.
AB463568 - Synthetic construct DNA, clone: pF1KB8249, Homo sapiens DIABLO gene for diablo homolog, without stop codon, in Flexi system.
KU178725 - Homo sapiens diablo-like protein isoform 1 (DIABLO) mRNA, partial cds.
KU178726 - Homo sapiens diablo-like protein isoform 2 (DIABLO) mRNA, partial cds.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NR28 (Reactome details) participates in the following event(s):

R-HSA-114307 Release of SMAC from mitochondria
R-HSA-114306 SMAC binds XIAP:Caspase-3
R-HSA-114354 SMAC binds XIAP:Caspase-7
R-HSA-114361 SMAC binds XIAP:Caspase-9
R-HSA-114419 Dissociation of Caspase-3 from SMAC:XIAP:Caspase-3
R-HSA-114440 Dissociation of Caspase-9 from SMAC:XIAP:Caspase-9
R-HSA-114392 Dissociation of Caspase-7 from SMAC:XIAP:Caspase-7
R-HSA-111457 Release of apoptotic factors from the mitochondria
R-HSA-111463 SMAC binds to IAPs
R-HSA-109606 Intrinsic Pathway for Apoptosis
R-HSA-111464 SMAC-mediated dissociation of IAP:caspase complexes
R-HSA-111469 SMAC-mediated apoptotic response
R-HSA-109581 Apoptosis
R-HSA-111471 Apoptotic factor-mediated response
R-HSA-5357801 Programmed Cell Death

-  Other Names for This Gene
  Alternate Gene Symbols: B2RDQ0, DBLOH_HUMAN, DIABLO, NM_019887, NP_063940, Q6W3F3, Q96LV0, Q9BT11, Q9HAV6, Q9NR28, SMAC
UCSC ID: uc010tab.2
RefSeq Accession: NM_019887
Protein: Q9NR28 (aka DBLOH_HUMAN or DBOH_HUMAN)
CCDS: CCDS9228.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_019887.4
exon count: 7CDS single in 3' UTR: no RNA size: 2265
ORF size: 720CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1633.00frame shift in genome: no % Coverage: 99.07
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.