Human Gene N4BP2L2 (uc010abe.1)
Description: Homo sapiens NEDD4 binding protein 2-like 2 (N4BP2L2), transcript variant 1, mRNA.
Transcript (Including UTRs)
Position: hg19 chr13:33,006,930-33,112,936 Size: 106,007 Total Exon Count: 10 Strand: -
Coding Region
Position: hg19 chr13:33,010,519-33,111,164 Size: 100,646 Coding Exon Count: 8
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
Press "+" in the title bar above to open this section.
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
Press "+" in the title bar above to open this section.
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
SCOP Domains: 52540 - P-loop containing nucleoside triphosphate hydrolases
ModBase Predicted Comparative 3D Structure on Q92802-3
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
U50529 - Human BRCA2 region, mRNA sequence CG016.AK093514 - Homo sapiens cDNA FLJ36195 fis, clone TESTI2027645.AK298546 - Homo sapiens cDNA FLJ55497 complete cds.AK310280 - Homo sapiens cDNA, FLJ17322.AL049802 - Novel human gene mapping to chomosome 13.AK125067 - Homo sapiens cDNA FLJ43077 fis, clone BRTHA3015910.BC131631 - Homo sapiens NEDD4 binding protein 2-like 2, mRNA (cDNA clone IMAGE:40118858), partial cds.JD084232 - Sequence 65256 from Patent EP1572962.FW553754 - IRNA AGENTS TARGETING VEGF.FW553755 - IRNA AGENTS TARGETING VEGF.FW553756 - IRNA AGENTS TARGETING VEGF.HI963460 - Sequence 390 from Patent EP1735009.HI963461 - Sequence 391 from Patent EP1735009.HI963462 - Sequence 392 from Patent EP1735009.HV496699 - JP 2011518117-A/1927: COMPOSITIONS AND METHODS FOR INHIBITING EXPRESSION OF EG5 AND VEGF GENES.HV496700 - JP 2011518117-A/1928: COMPOSITIONS AND METHODS FOR INHIBITING EXPRESSION OF EG5 AND VEGF GENES.HV496701 - JP 2011518117-A/1929: COMPOSITIONS AND METHODS FOR INHIBITING EXPRESSION OF EG5 AND VEGF GENES.HV983082 - JP 2011188866-A/390: IRNA AGENTS TARGETING VEGF.HV983083 - JP 2011188866-A/391: IRNA AGENTS TARGETING VEGF.HV983084 - JP 2011188866-A/392: IRNA AGENTS TARGETING VEGF.HZ402216 - JP 2015177801-A/1927: COMPOSITIONS AND METHODS FOR INHIBITING EXPRESSION OF EG5 AND VEGF GENES.HZ402217 - JP 2015177801-A/1928: COMPOSITIONS AND METHODS FOR INHIBITING EXPRESSION OF EG5 AND VEGF GENES.HZ402218 - JP 2015177801-A/1929: COMPOSITIONS AND METHODS FOR INHIBITING EXPRESSION OF EG5 AND VEGF GENES.HZ420313 - JP 2014094020-A/390: IRNA AGENTS TARGETING VEGF.HZ420314 - JP 2014094020-A/391: IRNA AGENTS TARGETING VEGF.HZ420315 - JP 2014094020-A/392: IRNA AGENTS TARGETING VEGF.LZ247484 - JP 2016135144-A/390: IRNA AGENTS TARGETING VEGF.LZ247485 - JP 2016135144-A/391: IRNA AGENTS TARGETING VEGF.LZ247486 - JP 2016135144-A/392: IRNA AGENTS TARGETING VEGF.AK123084 - Homo sapiens cDNA FLJ41089 fis, clone ASTRO2003574.AL049783 - Novel human gene mapping to chomosome 13.AL832581 - Homo sapiens mRNA; cDNA DKFZp451G1516 (from clone DKFZp451G1516).BC010643 - Homo sapiens NEDD4 binding protein 2-like 2, mRNA (cDNA clone MGC:9499 IMAGE:3852778), complete cds.U50532 - Human BRCA2 region, mRNA sequence CG005.AF530063 - Homo sapiens phosphonoformate immuno-associated protein 5 (PFAAP5) mRNA, complete cds.AK312924 - Homo sapiens cDNA, FLJ93374.BT007172 - Homo sapiens hypothetical protein from BCRA2 region mRNA, complete cds.DQ890625 - Synthetic construct clone IMAGE:100003255; FLH164450.01X; RZPDo839G05162D phosphonoformate immuno-associated protein 5 (PFAAP5) gene, encodes complete protein.KJ893041 - Synthetic construct Homo sapiens clone ccsbBroadEn_02435 N4BP2L2 gene, encodes complete protein.EU176484 - Synthetic construct Homo sapiens clone IMAGE:100011336; FLH164449.01L; RZPDo839E02253D phosphonoformate immuno-associated protein 5 (PFAAP5) gene, encodes complete protein.CU679777 - Synthetic construct Homo sapiens gateway clone IMAGE:100019909 5' read PFAAP5 mRNA.Z36834 - H.sapiens (xs7) mRNA, 407bp.
Other Names for This Gene
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_033111.3
exon count:
10 CDS single in 3' UTR:
no
RNA size:
2482
ORF size:
2259 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
4705.00 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
Click here
for a detailed description of the fields of the table above.
Methods, Credits, and Use Restrictions
Click here
for details on how this gene model was made and data restrictions if any.