Human Gene ATP5MGL (uc003bda.1)
  Description: Homo sapiens ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G2 (ATP5MGL), nuclear gene encoding mitochondrial protein, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr22:43,035,809-43,036,607 Size: 799 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr22:43,035,978-43,036,280 Size: 303 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:43,035,809-43,036,607)mRNA (may differ from genome)Protein (100 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGeneCardsLynxMGI
neXtProtPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AT5L2_HUMAN
DESCRIPTION: RecName: Full=ATP synthase subunit g 2, mitochondrial; Short=ATPase subunit g 2;
FUNCTION: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. Minor subunit located with subunit a in the membrane (By similarity).
SUBUNIT: F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(0) seems to have nine subunits: a, b, c, d, e, f, g, F6 and 8 (or A6L).
SUBCELLULAR LOCATION: Mitochondrion membrane (By similarity).
SIMILARITY: Belongs to the ATPase g subunit family.
CAUTION: Could be the product of a pseudogene.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.05 RPKM in Skin - Not Sun Exposed (Suprapubic)
Total median expression: 0.15 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -96.69327-0.296 Picture PostScript Text
3' UTR -34.40169-0.204 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016702 - ATP-Synthase_su_G_mt_met
IPR006808 - ATPase_F0-cplx_gsu_mt

Pfam Domains:
PF04718 - Mitochondrial ATP synthase g subunit

ModBase Predicted Comparative 3D Structure on Q7Z4Y8
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0015078 hydrogen ion transmembrane transporter activity
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism

Biological Process:
GO:0006754 ATP biosynthetic process
GO:0006811 ion transport
GO:0015986 ATP synthesis coupled proton transport
GO:0099132 ATP hydrolysis coupled cation transmembrane transport

Cellular Component:
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
GO:0005739 mitochondrion
GO:0016020 membrane
GO:0031966 mitochondrial membrane
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)


-  Descriptions from all associated GenBank mRNAs
  AF092923 - Homo sapiens F1Fo-ATP synthase complex Fo membrane domain g subunit mRNA, complete cds.
LF210208 - JP 2014500723-A/17711: Polycomb-Associated Non-Coding RNAs.
LF205210 - JP 2014500723-A/12713: Polycomb-Associated Non-Coding RNAs.
LF207321 - JP 2014500723-A/14824: Polycomb-Associated Non-Coding RNAs.
LF317772 - JP 2014500723-A/125275: Polycomb-Associated Non-Coding RNAs.
LF335695 - JP 2014500723-A/143198: Polycomb-Associated Non-Coding RNAs.
BC093721 - Homo sapiens ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G2 pseudogene, mRNA (cDNA clone IMAGE:7939566).
BC093719 - Homo sapiens ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G2 pseudogene, mRNA (cDNA clone IMAGE:7939564).
KJ895940 - Synthetic construct Homo sapiens clone ccsbBroadEn_05334 ATP5L2 gene, encodes complete protein.
LF317773 - JP 2014500723-A/125276: Polycomb-Associated Non-Coding RNAs.
LF364668 - JP 2014500723-A/172171: Polycomb-Associated Non-Coding RNAs.
LF335694 - JP 2014500723-A/143197: Polycomb-Associated Non-Coding RNAs.
JD144734 - Sequence 125758 from Patent EP1572962.
MA440787 - JP 2018138019-A/12713: Polycomb-Associated Non-Coding RNAs.
MA600245 - JP 2018138019-A/172171: Polycomb-Associated Non-Coding RNAs.
MA445785 - JP 2018138019-A/17711: Polycomb-Associated Non-Coding RNAs.
MA442898 - JP 2018138019-A/14824: Polycomb-Associated Non-Coding RNAs.
MA553349 - JP 2018138019-A/125275: Polycomb-Associated Non-Coding RNAs.
MA571272 - JP 2018138019-A/143198: Polycomb-Associated Non-Coding RNAs.
MA553350 - JP 2018138019-A/125276: Polycomb-Associated Non-Coding RNAs.
MA571271 - JP 2018138019-A/143197: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: AT5L2_HUMAN, ATP5K2, ATP5L2, NM_001165877, NP_001159349, Q7Z4Y8
UCSC ID: uc003bda.1
RefSeq Accession: NM_001165877
Protein: Q7Z4Y8 (aka AT5L2_HUMAN)
CCDS: CCDS54534.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001165877.1
exon count: 1CDS single in 3' UTR: no RNA size: 799
ORF size: 303CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 505.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.