Human Gene AF339817 (uc001vnl.3)
  Description: Homo sapiens clone IMAGE:33685, mRNA sequence.
Transcript (Including UTRs)
   Position: hg19 chr13:99,053,670-99,059,751 Size: 6,082 Total Exon Count: 1 Strand: +


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:99,053,670-99,059,751)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaEnsembl
ExonPrimerPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.10 RPKM in Kidney - Cortex
Total median expression: 310.79 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BX537667 - Homo sapiens mRNA; cDNA DKFZp686D08109 (from clone DKFZp686D08109).
JD110950 - Sequence 91974 from Patent EP1572962.
AK025683 - Homo sapiens cDNA: FLJ22030 fis, clone HEP08669.
AF339817 - Homo sapiens clone IMAGE:33685, mRNA sequence.

-  Other Names for This Gene
  UCSC ID: uc001vnl.3
Representative RNA: AF339817

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: AF339817.1
exon count: 1CDS single in 3' UTR: no RNA size: 1502
ORF size: 0CDS single in intron: no Alignment % ID: 99.86
txCdsPredict score: 404.50frame shift in genome: no % Coverage: 98.67
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.