The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF15788 - Domain of unknown function (DUF4705)
ModBase Predicted Comparative 3D Structure on B4DYM5
Front
Top
Side
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse
Rat
Zebrafish
D. melanogaster
C. elegans
S. cerevisiae
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
Descriptions from all associated GenBank mRNAs
AK302511 - Homo sapiens cDNA FLJ61476 complete cds. DQ593908 - Homo sapiens piRNA piR-34020, complete sequence. JD295139 - Sequence 276163 from Patent EP1572962. JD048854 - Sequence 29878 from Patent EP1572962. JD098617 - Sequence 79641 from Patent EP1572962. JD386349 - Sequence 367373 from Patent EP1572962. JD171508 - Sequence 152532 from Patent EP1572962. DQ595057 - Homo sapiens piRNA piR-61169, complete sequence. JD460292 - Sequence 441316 from Patent EP1572962. DQ600587 - Homo sapiens piRNA piR-38653, complete sequence. JD422535 - Sequence 403559 from Patent EP1572962. DQ584937 - Homo sapiens piRNA piR-52049, complete sequence. JD459796 - Sequence 440820 from Patent EP1572962. JD049302 - Sequence 30326 from Patent EP1572962. DQ574318 - Homo sapiens piRNA piR-42430, complete sequence. DQ574835 - Homo sapiens piRNA piR-42947, complete sequence. DQ599768 - Homo sapiens piRNA piR-37834, complete sequence. JD363412 - Sequence 344436 from Patent EP1572962. JD262631 - Sequence 243655 from Patent EP1572962. JD338139 - Sequence 319163 from Patent EP1572962. JD422600 - Sequence 403624 from Patent EP1572962. JD133347 - Sequence 114371 from Patent EP1572962. JD153711 - Sequence 134735 from Patent EP1572962. JD528207 - Sequence 509231 from Patent EP1572962. JD428549 - Sequence 409573 from Patent EP1572962. JD550651 - Sequence 531675 from Patent EP1572962. JD262371 - Sequence 243395 from Patent EP1572962. JD546925 - Sequence 527949 from Patent EP1572962. JD546926 - Sequence 527950 from Patent EP1572962. JD404699 - Sequence 385723 from Patent EP1572962. JD098406 - Sequence 79430 from Patent EP1572962. JD199168 - Sequence 180192 from Patent EP1572962. JD105026 - Sequence 86050 from Patent EP1572962. JD119230 - Sequence 100254 from Patent EP1572962. JD107843 - Sequence 88867 from Patent EP1572962. DQ575105 - Homo sapiens piRNA piR-43217, complete sequence. JD479433 - Sequence 460457 from Patent EP1572962. JD177586 - Sequence 158610 from Patent EP1572962. DQ595057 - Homo sapiens piRNA piR-61169, complete sequence. DQ574670 - Homo sapiens piRNA piR-42782, complete sequence. JD118872 - Sequence 99896 from Patent EP1572962. JD118873 - Sequence 99897 from Patent EP1572962. JD209903 - Sequence 190927 from Patent EP1572962. JD456771 - Sequence 437795 from Patent EP1572962. DQ592480 - Homo sapiens piRNA piR-59592, complete sequence. DQ599872 - Homo sapiens piRNA piR-37938, complete sequence. DQ599873 - Homo sapiens piRNA piR-37939, complete sequence. DQ599874 - Homo sapiens piRNA piR-37940, complete sequence. DQ596298 - Homo sapiens piRNA piR-34364, complete sequence. DQ597235 - Homo sapiens piRNA piR-35301, complete sequence. JD075651 - Sequence 56675 from Patent EP1572962. JD460292 - Sequence 441316 from Patent EP1572962. DQ600587 - Homo sapiens piRNA piR-38653, complete sequence. JD422535 - Sequence 403559 from Patent EP1572962. DQ584937 - Homo sapiens piRNA piR-52049, complete sequence. JD459796 - Sequence 440820 from Patent EP1572962. JD049302 - Sequence 30326 from Patent EP1572962. DQ574318 - Homo sapiens piRNA piR-42430, complete sequence. DQ574835 - Homo sapiens piRNA piR-42947, complete sequence. DQ599768 - Homo sapiens piRNA piR-37834, complete sequence. JD363412 - Sequence 344436 from Patent EP1572962. JD262631 - Sequence 243655 from Patent EP1572962. JD338139 - Sequence 319163 from Patent EP1572962. JD422600 - Sequence 403624 from Patent EP1572962. JD087192 - Sequence 68216 from Patent EP1572962. JD295056 - Sequence 276080 from Patent EP1572962. JD387613 - Sequence 368637 from Patent EP1572962. JD258247 - Sequence 239271 from Patent EP1572962. JD375182 - Sequence 356206 from Patent EP1572962. JD079421 - Sequence 60445 from Patent EP1572962. DQ572955 - Homo sapiens piRNA piR-41067, complete sequence. DQ575018 - Homo sapiens piRNA piR-43130, complete sequence. JD320934 - Sequence 301958 from Patent EP1572962. DQ595736 - Homo sapiens piRNA piR-61848, complete sequence. JD370485 - Sequence 351509 from Patent EP1572962. JD536537 - Sequence 517561 from Patent EP1572962. JD536538 - Sequence 517562 from Patent EP1572962. DQ577524 - Homo sapiens piRNA piR-45636, complete sequence. DQ572788 - Homo sapiens piRNA piR-40900, complete sequence. JD387791 - Sequence 368815 from Patent EP1572962. JD387792 - Sequence 368816 from Patent EP1572962. DQ598407 - Homo sapiens piRNA piR-36473, complete sequence. JD336976 - Sequence 318000 from Patent EP1572962. JD258244 - Sequence 239268 from Patent EP1572962. JD411284 - Sequence 392308 from Patent EP1572962. JD107100 - Sequence 88124 from Patent EP1572962. DQ589481 - Homo sapiens piRNA piR-56593, complete sequence. JD219716 - Sequence 200740 from Patent EP1572962. JD180704 - Sequence 161728 from Patent EP1572962. DQ580039 - Homo sapiens piRNA piR-48151, complete sequence. DQ586255 - Homo sapiens piRNA piR-53367, complete sequence. JD317554 - Sequence 298578 from Patent EP1572962. JD317553 - Sequence 298577 from Patent EP1572962. JD105217 - Sequence 86241 from Patent EP1572962. JD105216 - Sequence 86240 from Patent EP1572962. JD260725 - Sequence 241749 from Patent EP1572962. JD156355 - Sequence 137379 from Patent EP1572962. JD453018 - Sequence 434042 from Patent EP1572962. JD107007 - Sequence 88031 from Patent EP1572962. JD370486 - Sequence 351510 from Patent EP1572962. JD114170 - Sequence 95194 from Patent EP1572962. JD547834 - Sequence 528858 from Patent EP1572962. JD234509 - Sequence 215533 from Patent EP1572962. DQ576962 - Homo sapiens piRNA piR-45074, complete sequence. JD227787 - Sequence 208811 from Patent EP1572962. JD203987 - Sequence 185011 from Patent EP1572962. JD417489 - Sequence 398513 from Patent EP1572962. JD422543 - Sequence 403567 from Patent EP1572962. JD382336 - Sequence 363360 from Patent EP1572962. DQ590432 - Homo sapiens piRNA piR-57544, complete sequence. JD368262 - Sequence 349286 from Patent EP1572962.