Human Gene AK021888 (uc003kor.1)
  Description: Homo sapiens cDNA FLJ11826 fis, clone HEMBA1006497.
Transcript (Including UTRs)
   Position: hg19 chr5:108,528,056-108,530,759 Size: 2,704 Total Exon Count: 1 Strand: +


Page IndexSequence and LinksPrimersMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:108,528,056-108,530,759)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaExonPrimerH-INV
PubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK123847 - Homo sapiens cDNA FLJ41853 fis, clone NT2RI3004161.
AK092320 - Homo sapiens cDNA FLJ35001 fis, clone OCBBF2011887.
JD023005 - Sequence 4029 from Patent EP1572962.
JD030075 - Sequence 11099 from Patent EP1572962.
JD029768 - Sequence 10792 from Patent EP1572962.
AK021888 - Homo sapiens cDNA FLJ11826 fis, clone HEMBA1006497.
LF210900 - JP 2014500723-A/18403: Polycomb-Associated Non-Coding RNAs.
MA446477 - JP 2018138019-A/18403: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  UCSC ID: uc003kor.1
Representative RNA: AK021888

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: AK021888.1
exon count: 1CDS single in 3' UTR: no RNA size: 1733
ORF size: 0CDS single in intron: no Alignment % ID: 99.71
txCdsPredict score: 416.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.