Human Gene GUSBP1 (uc010iub.3)
Description: Homo sapiens glucuronidase, beta pseudogene 1 (GUSBP1), transcript variant 3, non-coding RNA.
Transcript (Including UTRs)
Position: hg19 chr5:21,459,589-21,497,305 Size: 37,717 Total Exon Count: 6 Strand: +
Coding Region
Position: hg19 chr5:21,459,669-21,497,231 Size: 37,563 Coding Exon Count: 6
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR013812 - Glyco_hydro_2/20_Ig-like
IPR006102 - Glyco_hydro_2_Ig-like
SCOP Domains: 49303 - beta-Galactosidase/glucuronidase domain
ModBase Predicted Comparative 3D Structure on B4DZD7
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
AK302866 - Homo sapiens cDNA FLJ58963 complete cds, highly similar to Beta-glucuronidase-like protein SMA3.AK290693 - Homo sapiens cDNA FLJ75429 complete cds, highly similar to Homo sapiens glucuronidase, beta-like 2 (GUSBL2), transcript variant 1, mRNA.BC147000 - Homo sapiens glucuronidase, beta pseudogene, mRNA (cDNA clone IMAGE:9056928).AK095656 - Homo sapiens cDNA FLJ38337 fis, clone FCBBF3026692, moderately similar to Homo sapiens WD repeat domain 70 (WDR70), mRNA.BC070045 - Homo sapiens cDNA clone IMAGE:30348136, partial cds.BC038977 - Homo sapiens glucuronidase, beta pseudogene, mRNA (cDNA clone IMAGE:5555860), with apparent retained intron.BC052307 - Homo sapiens cDNA clone IMAGE:6574963, partial cds.BC094818 - Homo sapiens cDNA clone IMAGE:6383257.LF335953 - JP 2014500723-A/143456: Polycomb-Associated Non-Coding RNAs.JD045900 - Sequence 26924 from Patent EP1572962.L40519 - Homo sapiens (clone DR2) mRNA fragment.DQ583004 - Homo sapiens piRNA piR-50116, complete sequence.JD268451 - Sequence 249475 from Patent EP1572962.JD559997 - Sequence 541021 from Patent EP1572962.JD390493 - Sequence 371517 from Patent EP1572962.MA571530 - JP 2018138019-A/143456: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: B4DZD7, B4DZD7_HUMAN, NR_027028UCSC ID: uc010iub.3RefSeq Accession: NR_027028
Protein: B4DZD7
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NR_027028.2
exon count:
6 CDS single in 3' UTR:
no
RNA size:
703
ORF size:
549 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
924.00 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.