Human Gene MYNN (uc010hwo.3)
  Description: Homo sapiens myoneurin (MYNN), transcript variant 3, mRNA.
RefSeq Summary (NM_001185119): This gene encodes a member of the BTB/POZ and zinc finger domain-containing protein family that are involved in the control of gene expression. Alternative splicing results in multiple transcript variants and a pseudogene has been identified on chromosome 14. [provided by RefSeq, Jun 2010].
Transcript (Including UTRs)
   Position: hg19 chr3:169,492,053-169,507,504 Size: 15,452 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr3:169,492,084-169,504,466 Size: 12,383 Coding Exon Count: 6 

Page IndexSequence and LinksPrimersGenetic AssociationsCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:169,492,053-169,507,504)mRNA (may differ from genome)Protein (581 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
H-INVHGNCLynxMGIOMIMPubMed
UniProtKBBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): MYNN
CDC HuGE Published Literature: MYNN
Positive Disease Associations: Celiac Disease , Colorectal Neoplasms , Multiple Sclerosis
Related Studies:
  1. Celiac Disease
    Patrick C A Dubois et al. Nature genetics 2010, Multiple common variants for celiac disease influencing immune gene expression., Nature genetics. [PubMed 20190752]
  2. Colorectal Neoplasms
    Richard S Houlston et al. Nature genetics 2010, Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33., Nature genetics. [PubMed 20972440]
  3. Multiple Sclerosis
    Stephen Sawcer et al. Nature 2011, Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis., Nature. [PubMed 21833088]
           more ... click here to view the complete list

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.17 RPKM in Testis
Total median expression: 177.85 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -2.4031-0.077 Picture PostScript Text
3' UTR -708.163038-0.233 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF00096 - Zinc finger, C2H2 type
PF00651 - BTB/POZ domain
PF12874 - Zinc-finger of C2H2 type
PF13894 - C2H2-type zinc finger
PF13912 - C2H2-type zinc finger

SCOP Domains:
48695 - Multiheme cytochromes
54695 - POZ domain
57667 - C2H2 and C2HC zinc fingers

ModBase Predicted Comparative 3D Structure on Q9NPC7-2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologNo orthologNo ortholog
      
      
  Ensembl   
  Protein Sequence   
  Alignment   

-  Descriptions from all associated GenBank mRNAs
  AK092022 - Homo sapiens cDNA FLJ34703 fis, clone MESAN2002844, highly similar to Homo sapiens myoneurin (MYNN), mRNA.
BX648128 - Homo sapiens mRNA; cDNA DKFZp686J1140 (from clone DKFZp686J1140).
BC020610 - Homo sapiens myoneurin, mRNA (cDNA clone IMAGE:4721583), partial cds.
AK312527 - Homo sapiens cDNA, FLJ92895, Homo sapiens myoneurin (MYNN), mRNA.
AK304281 - Homo sapiens cDNA FLJ52196 complete cds, highly similar to Homo sapiens myoneurin (MYNN), mRNA.
AK307916 - Homo sapiens cDNA, FLJ97864.
AK021646 - Homo sapiens cDNA FLJ11584 fis, clone HEMBA1003684, weakly similar to ZINC FINGER PROTEIN 151.
AF076249 - Homo sapiens zinc finger protein SBBIZ1 mRNA, complete cds.
AF155508 - Homo sapiens truncated zinc finger protein SBBIZ1 mRNA, complete cds.
AF148848 - Homo sapiens myoneurin mRNA, complete cds.
BC033620 - Homo sapiens myoneurin, mRNA (cDNA clone MGC:40252 IMAGE:5201998), complete cds.
AB079777 - Homo sapiens mRNA for OSZF, complete cds.
AB079778 - Homo sapiens mRNA for OSZF isoform, complete cds.
JD302943 - Sequence 283967 from Patent EP1572962.
AB528460 - Synthetic construct DNA, clone: pF1KB7832, Homo sapiens MYNN gene for myoneurin, without stop codon, in Flexi system.
KJ899213 - Synthetic construct Homo sapiens clone ccsbBroadEn_08607 MYNN gene, encodes complete protein.
DQ891596 - Synthetic construct clone IMAGE:100004226; FLH178468.01X; RZPDo839D07128D myoneurin (MYNN) gene, encodes complete protein.
DQ894790 - Synthetic construct Homo sapiens clone IMAGE:100009250; FLH178464.01L; RZPDo839D07127D myoneurin (MYNN) gene, encodes complete protein.
AY541761 - Homo sapiens clone CBZ3 myoneurin (MYNN) mRNA, partial cds.
AY515692 - Homo sapiens myoneurin transcript variant m4b (MYNN) mRNA, partial cds.
AY515691 - Homo sapiens myoneurin transcript variant BZA1 (MYNN) mRNA, partial cds.
AL133070 - Homo sapiens mRNA; cDNA DKFZp434C0917 (from clone DKFZp434C0917); partial cds.
AY514901 - Homo sapiens myoneurin (MYNN) mRNA, transcript variant m7b, partial cds.
AY541760 - Homo sapiens clone CBZ2A myoneurin (MYNN) mRNA, partial cds.
JD250390 - Sequence 231414 from Patent EP1572962.
JD236283 - Sequence 217307 from Patent EP1572962.
JD561946 - Sequence 542970 from Patent EP1572962.
JD114504 - Sequence 95528 from Patent EP1572962.
JD370319 - Sequence 351343 from Patent EP1572962.
JD294839 - Sequence 275863 from Patent EP1572962.
JD447596 - Sequence 428620 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_001185119, NP_001172048, OSZF, Q9NPC7-2, SBBIZ1, ZBTB31
UCSC ID: uc010hwo.3
RefSeq Accession: NM_001185119
Protein: Q9NPC7-2, splice isoform of Q9NPC7 CCDS: CCDS3207.1, CCDS54671.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001185119.1
exon count: 6CDS single in 3' UTR: no RNA size: 4815
ORF size: 1746CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3692.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.