The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse
Rat
Zebrafish
D. melanogaster
C. elegans
S. cerevisiae
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
Descriptions from all associated GenBank mRNAs
LF212455 - JP 2014500723-A/19958: Polycomb-Associated Non-Coding RNAs. BC065478 - Homo sapiens cDNA clone IMAGE:5090880, partial cds. BC064353 - Homo sapiens cDNA clone IMAGE:4708512, partial cds. BC037415 - Homo sapiens, clone IMAGE:5164359, mRNA. AK057023 - Homo sapiens cDNA FLJ32461 fis, clone SKNMC1000168. BC080562 - Homo sapiens cDNA clone IMAGE:6340312. BC019592 - Homo sapiens, clone IMAGE:4915712, mRNA. BC033110 - Homo sapiens, clone IMAGE:5443970, mRNA, partial cds. BC043620 - Homo sapiens cDNA clone IMAGE:6160096, partial cds. JD183573 - Sequence 164597 from Patent EP1572962. JD116685 - Sequence 97709 from Patent EP1572962. JD316104 - Sequence 297128 from Patent EP1572962. JD539117 - Sequence 520141 from Patent EP1572962. JD210608 - Sequence 191632 from Patent EP1572962. LF209345 - JP 2014500723-A/16848: Polycomb-Associated Non-Coding RNAs. LF327881 - JP 2014500723-A/135384: Polycomb-Associated Non-Coding RNAs. JD101436 - Sequence 82460 from Patent EP1572962. JD141256 - Sequence 122280 from Patent EP1572962. JD336780 - Sequence 317804 from Patent EP1572962. LF213271 - JP 2014500723-A/20774: Polycomb-Associated Non-Coding RNAs. JD387347 - Sequence 368371 from Patent EP1572962. JD239395 - Sequence 220419 from Patent EP1572962. JD163606 - Sequence 144630 from Patent EP1572962. JD307475 - Sequence 288499 from Patent EP1572962. JD141232 - Sequence 122256 from Patent EP1572962. JD120724 - Sequence 101748 from Patent EP1572962. JD506978 - Sequence 488002 from Patent EP1572962. JD406555 - Sequence 387579 from Patent EP1572962. JD197972 - Sequence 178996 from Patent EP1572962. JD336057 - Sequence 317081 from Patent EP1572962. JD451932 - Sequence 432956 from Patent EP1572962. MA563458 - JP 2018138019-A/135384: Polycomb-Associated Non-Coding RNAs. MA448032 - JP 2018138019-A/19958: Polycomb-Associated Non-Coding RNAs. MA444922 - JP 2018138019-A/16848: Polycomb-Associated Non-Coding RNAs. MA448848 - JP 2018138019-A/20774: Polycomb-Associated Non-Coding RNAs.