Human Gene MTG2 (uc002yce.4)
  Description: Homo sapiens mitochondrial ribosome-associated GTPase 2 (MTG2), mRNA.
RefSeq Summary (NM_015666): Small G proteins, such as GTPBP5, act as molecular switches that play crucial roles in the regulation of fundamental cellular processes such as protein synthesis, nuclear transport, membrane trafficking, and signal transduction (Hirano et al., 2006 [PubMed 17054726]).[supplied by OMIM, Mar 2008].
Transcript (Including UTRs)
   Position: hg19 chr20:60,758,081-60,777,810 Size: 19,730 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr20:60,768,477-60,776,133 Size: 7,657 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:60,758,081-60,777,810)mRNA (may differ from genome)Protein (406 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHPRDMGIneXtProtOMIM
PubMedTreefamUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GTPB5_HUMAN
DESCRIPTION: RecName: Full=GTP-binding protein 5; AltName: Full=Protein obg homolog 1; Short=ObgH1;
FUNCTION: Involved in the ribosome maturation process. Plays a role of GTPase in vitro. When missing, mitochondria elongation and abnormal nuclear morphology are observed.
SUBCELLULAR LOCATION: Mitochondrion.
SIMILARITY: Belongs to the GTP1/OBG family.
SIMILARITY: Contains 1 G (guanine nucleotide-binding) domain.
SEQUENCE CAUTION: Sequence=BAA91783.1; Type=Erroneous termination; Positions=402; Note=Translated as Gln;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.42 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 301.29 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -13.2038-0.347 Picture PostScript Text
3' UTR -726.201677-0.433 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR014100 - GTP-bd_Obg/CgtA
IPR006169 - GTP1_OBG_dom
IPR006073 - GTP_binding_domain
IPR005225 - Small_GTP-bd_dom

Pfam Domains:
PF00025 - ADP-ribosylation factor family
PF01018 - GTP1/OBG
PF01926 - 50S ribosome-binding GTPase
PF02421 - Ferrous iron transport protein B

SCOP Domains:
82051 - Obg GTP-binding protein N-terminal domain
52540 - P-loop containing nucleoside triphosphate hydrolases

ModBase Predicted Comparative 3D Structure on Q9H4K7
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserGenome BrowserGenome BrowserGenome Browser
Gene Details  Gene DetailsGene DetailsGene Details
Gene Sorter  Gene SorterGene SorterGene Sorter
  EnsemblFlyBaseWormBaseSGD
  Protein SequenceProtein SequenceProtein SequenceProtein Sequence
  AlignmentAlignmentAlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000287 magnesium ion binding
GO:0003924 GTPase activity
GO:0005525 GTP binding
GO:0046872 metal ion binding

Biological Process:
GO:0006417 regulation of translation
GO:0042254 ribosome biogenesis
GO:0044065 regulation of respiratory system process
GO:0070129 regulation of mitochondrial translation

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005759 mitochondrial matrix
GO:0005761 mitochondrial ribosome
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  LF383781 - JP 2014500723-A/191284: Polycomb-Associated Non-Coding RNAs.
AK316027 - Homo sapiens cDNA, FLJ78926 complete cds, highly similar to GTP-binding protein 5.
AK316325 - Homo sapiens cDNA, FLJ79224 complete cds, highly similar to GTP-binding protein 5.
AK299189 - Homo sapiens cDNA FLJ57421 complete cds, highly similar to GTP-binding protein 5.
AK299726 - Homo sapiens cDNA FLJ60853 complete cds, highly similar to GTP-binding protein 5.
AK299147 - Homo sapiens cDNA FLJ60822 complete cds, highly similar to GTP-binding protein 5.
AK124572 - Homo sapiens cDNA FLJ42581 fis, clone BRACE3008720, weakly similar to SPO0B-associated GTP-binding protein.
BC040178 - Homo sapiens GTP binding protein 5 (putative), mRNA (cDNA clone IMAGE:4797390), with apparent retained intron.
BC036716 - Homo sapiens GTP binding protein 5 (putative), mRNA (cDNA clone MGC:29512 IMAGE:4900170), complete cds.
AK001603 - Homo sapiens cDNA FLJ10741 fis, clone NT2RP3001529, weakly similar to SPO0B-ASSOCIATED GTP-BINDING PROTEIN.
BC012073 - Homo sapiens cDNA clone IMAGE:4564032.
HQ447737 - Synthetic construct Homo sapiens clone IMAGE:100071068; CCSB012579_01 GTP binding protein 5 (putative) (GTPBP5) gene, encodes complete protein.
KJ898603 - Synthetic construct Homo sapiens clone ccsbBroadEn_07997 GTPBP5 gene, encodes complete protein.
CU691392 - Synthetic construct Homo sapiens gateway clone IMAGE:100021946 5' read GTPBP5 mRNA.
LF350918 - JP 2014500723-A/158421: Polycomb-Associated Non-Coding RNAs.
LF350919 - JP 2014500723-A/158422: Polycomb-Associated Non-Coding RNAs.
AL117498 - Homo sapiens mRNA; cDNA DKFZp434C0935 (from clone DKFZp434C0935); partial cds.
BC007885 - Homo sapiens GTP binding protein 5 (putative), mRNA (cDNA clone IMAGE:4123053), with apparent retained intron.
JD336876 - Sequence 317900 from Patent EP1572962.
JD477212 - Sequence 458236 from Patent EP1572962.
JD396436 - Sequence 377460 from Patent EP1572962.
JD566280 - Sequence 547304 from Patent EP1572962.
JD144223 - Sequence 125247 from Patent EP1572962.
JD362584 - Sequence 343608 from Patent EP1572962.
JD118676 - Sequence 99700 from Patent EP1572962.
JD474353 - Sequence 455377 from Patent EP1572962.
JD209427 - Sequence 190451 from Patent EP1572962.
DQ591128 - Homo sapiens piRNA piR-58240, complete sequence.
JD227342 - Sequence 208366 from Patent EP1572962.
JD521419 - Sequence 502443 from Patent EP1572962.
JD061667 - Sequence 42691 from Patent EP1572962.
JD527901 - Sequence 508925 from Patent EP1572962.
JD442644 - Sequence 423668 from Patent EP1572962.
JD290977 - Sequence 272001 from Patent EP1572962.
JD264455 - Sequence 245479 from Patent EP1572962.
JD336561 - Sequence 317585 from Patent EP1572962.
JD455383 - Sequence 436407 from Patent EP1572962.
JD537236 - Sequence 518260 from Patent EP1572962.
JD123897 - Sequence 104921 from Patent EP1572962.
JD339027 - Sequence 320051 from Patent EP1572962.
JD422868 - Sequence 403892 from Patent EP1572962.
JD537146 - Sequence 518170 from Patent EP1572962.
JD390265 - Sequence 371289 from Patent EP1572962.
JD037711 - Sequence 18735 from Patent EP1572962.
JD324777 - Sequence 305801 from Patent EP1572962.
JD547801 - Sequence 528825 from Patent EP1572962.
JD045158 - Sequence 26182 from Patent EP1572962.
JD293996 - Sequence 275020 from Patent EP1572962.
JD481437 - Sequence 462461 from Patent EP1572962.
JD445265 - Sequence 426289 from Patent EP1572962.
JD211736 - Sequence 192760 from Patent EP1572962.
JD144615 - Sequence 125639 from Patent EP1572962.
JD497577 - Sequence 478601 from Patent EP1572962.
JD542224 - Sequence 523248 from Patent EP1572962.
JD542225 - Sequence 523249 from Patent EP1572962.
JD051522 - Sequence 32546 from Patent EP1572962.
JD366209 - Sequence 347233 from Patent EP1572962.
JD517254 - Sequence 498278 from Patent EP1572962.
JD105398 - Sequence 86422 from Patent EP1572962.
MA619358 - JP 2018138019-A/191284: Polycomb-Associated Non-Coding RNAs.
MA586495 - JP 2018138019-A/158421: Polycomb-Associated Non-Coding RNAs.
MA586496 - JP 2018138019-A/158422: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A6NDR3, GTPB5_HUMAN, GTPBP5, NM_015666, NP_056481, OBGH1, Q96I17, Q9H4K7, Q9NVG9, Q9UFR4
UCSC ID: uc002yce.4
RefSeq Accession: NM_015666
Protein: Q9H4K7 (aka GTPB5_HUMAN or GTB5_HUMAN)
CCDS: CCDS13492.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_015666.3
exon count: 7CDS single in 3' UTR: no RNA size: 2949
ORF size: 1221CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2642.00frame shift in genome: no % Coverage: 99.56
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.