Human Gene MIGA1 (uc010ork.3)
Description: Homo sapiens family with sequence similarity 73, member A (MIGA1), transcript variant 2, mRNA.
Transcript (Including UTRs)
Position: hg19 chr1:78,245,309-78,345,225 Size: 99,917 Total Exon Count: 16 Strand: +
Coding Region
Position: hg19 chr1:78,245,341-78,340,749 Size: 95,409 Coding Exon Count: 16
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR019392 - DUF2217
Pfam Domains: PF10265 - Mitoguardin
ModBase Predicted Comparative 3D Structure on B7ZLZ8
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
BX537792 - Homo sapiens mRNA; cDNA DKFZp686M07166 (from clone DKFZp686M07166); complete cds.BC130387 - Homo sapiens family with sequence similarity 73, member A, mRNA (cDNA clone MGC:163259 IMAGE:40146418), complete cds.BC144167 - Homo sapiens family with sequence similarity 73, member A, mRNA (cDNA clone MGC:177704 IMAGE:9052687), complete cds.AK296411 - Homo sapiens cDNA FLJ54361 complete cds.AK092412 - Homo sapiens cDNA FLJ35093 fis, clone PLACE6006137.AX747532 - Sequence 1057 from Patent EP1308459.BX641170 - Homo sapiens mRNA; cDNA DKFZp686K12247 (from clone DKFZp686K12247).U02055 - Human clone 13 Alu repeat sequence.JD335281 - Sequence 316305 from Patent EP1572962.JD387955 - Sequence 368979 from Patent EP1572962.JD118045 - Sequence 99069 from Patent EP1572962.JD138412 - Sequence 119436 from Patent EP1572962.JD066631 - Sequence 47655 from Patent EP1572962.JD176445 - Sequence 157469 from Patent EP1572962.JD183910 - Sequence 164934 from Patent EP1572962.JD280445 - Sequence 261469 from Patent EP1572962.JD135801 - Sequence 116825 from Patent EP1572962.JD238374 - Sequence 219398 from Patent EP1572962.JD047622 - Sequence 28646 from Patent EP1572962.JD243197 - Sequence 224221 from Patent EP1572962.JD079526 - Sequence 60550 from Patent EP1572962.JD457017 - Sequence 438041 from Patent EP1572962.JD117520 - Sequence 98544 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: B7ZLZ8, B7ZLZ8_HUMAN, FAM73A, NM_001270384, NP_001257313, uc010ork.2UCSC ID: uc010ork.3RefSeq Accession: NM_001270384
Protein: B7ZLZ8
CCDS: CCDS681.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_001270384.1
exon count:
16 CDS single in 3' UTR:
no
RNA size:
6427
ORF size:
1902 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
3808.00 frame shift in genome:
no
% Coverage:
99.74
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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