Human Gene MAPKAPK5 (uc001tta.4)
  Description: Homo sapiens mitogen-activated protein kinase-activated protein kinase 5 (MAPKAPK5), transcript variant 2, mRNA.
RefSeq Summary (NM_139078): The protein encoded by this gene is a tumor suppressor and member of the serine/threonine kinase family. In response to cellular stress and proinflammatory cytokines, this kinase is activated through its phosphorylation by MAP kinases including MAPK1/ERK, MAPK14/p38-alpha, and MAPK11/p38-beta. The encoded protein is found in the nucleus but translocates to the cytoplasm upon phosphorylation and activation. This kinase phosphorylates heat shock protein HSP27 at its physiologically relevant sites. Two alternately spliced transcript variants of this gene encoding distinct isoforms have been reported. [provided by RefSeq, Nov 2012]. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments.
Transcript (Including UTRs)
   Position: hg19 chr12:112,280,032-112,331,228 Size: 51,197 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg19 chr12:112,280,538-112,330,865 Size: 50,328 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:112,280,032-112,331,228)mRNA (may differ from genome)Protein (473 aa)
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neXtProtOMIMPubMedReactomeUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MAPK5_HUMAN
DESCRIPTION: RecName: Full=MAP kinase-activated protein kinase 5; Short=MAPK-activated protein kinase 5; Short=MAPKAP kinase 5; Short=MAPKAP-K5; Short=MAPKAPK-5; Short=MK-5; Short=MK5; EC=2.7.11.1; AltName: Full=p38-regulated/activated protein kinase; Short=PRAK;
FUNCTION: Tumor suppressor serine/threonine-protein kinase involved in mTORC1 signaling and post-transcriptional regulation. Phosphorylates FOXO3, ERK3/MAPK6, ERK4/MAPK4, HSP27/HSPB1, p53/TP53 and RHEB. Acts as a tumor suppressor by mediating Ras- induced senescence and phosphorylating p53/TP53. Involved in post- transcriptional regulation of MYC by mediating phosphorylation of FOXO3: phosphorylation of FOXO3 leads to promote nuclear localization of FOXO3, enabling expression of miR-34b and miR-34c, 2 post-transcriptional regulators of MYC that bind to the 3'UTR of MYC transcript and prevent MYC translation. Acts as a negative regulator of mTORC1 signaling by mediating phosphorylation and inhibition of RHEB. Part of the atypical MAPK signaling via its interaction with ERK3/MAPK6 or ERK4/MAPK4: the precise role of the complex formed with ERK3/MAPK6 or ERK4/MAPK4 is still unclear, but the complex follows a complex set of phosphorylation events: upon interaction with atypical MAPK (ERK3/MAPK6 or ERK4/MAPK4), ERK3/MAPK6 (or ERK4/MAPK4) is phosphorylated and then mediates phosphorylation and activation of MAPKAPK5, which in turn phosphorylates ERK3/MAPK6 (or ERK4/MAPK4). Mediates phosphorylation of HSP27/HSPB1 in response to PKA/PRKACA stimulation, inducing F-actin rearrangement.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
ENZYME REGULATION: Activated following phosphorylation at Thr-182 by p38-alpha/MAPK14, p38-beta/MAPK11, ERK2/MAPK1, ERK3/MAPK6, and ERK4/MAPK4. Activated by stress-related extracellular stimuli; such as H(2)O(2), arsenite, anisomycin TNF alpha and also PMA and the calcium ionophore A23187; but to a lesser extent. In vitro, activated by SQSTM1. Inhibited by diterpenoid alkaloid noroxoaconitine.
SUBUNIT: Interacts with ERK3/MAPK6 and ERK4/MAPK4 (via FRIEDE motif); the interaction is direct (By similarity). Interacts with YWHAE; the interaction prevents phosphorylation of HSP27/HSPB1 leading to disrupt F-actin polymerization. Interacts with SQSTM1.
INTERACTION: P04792:HSPB1; NbExp=2; IntAct=EBI-1201460, EBI-352682; P04637:TP53; NbExp=2; IntAct=EBI-1201460, EBI-366083;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=Translocates to the cytoplasm following phosphorylation and activation. Interaction with ERK3/MAPK6 or ERK4/MAPK4 and phosphorylation at Thr-182, activates the protein kinase activity, followed by translocation to the cytoplasm. Phosphorylation by PKA/PRKACA at Ser-115 also induces nuclear export.
TISSUE SPECIFICITY: Expressed ubiquitously.
INDUCTION: Directly regulated by MYC: expression is activated by MYC, suggesting the existence of a feedback regulatory loop.
PTM: Phosphorylated on Thr-182 ERK3/MAPK6 or ERK4/MAPK4; which is the regulatory phosphorylation site and is located on the T- loop/loop 12, leading to activation. Phosphorylation at Thr-182 by p38-alpha/MAPK14, p38-beta/MAPK11 is subject to debate. Phosphorylated at Ser-115 by PKA/PRKACA, leading to localization to the cytoplasm. Autophosphorylated (By similarity).
SIMILARITY: Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family.
SIMILARITY: Contains 1 protein kinase domain.
CAUTION: The role of p38 MAPK kinases is unclear in phosphorylation and activation of MAPKAPK5. According to some reports, it interacts and is phosphorylated by p38-alpha/MAPK14 and p38-beta/MAPK11 (PubMed:9628874 and PubMed:12808055). According to other reports, it is not activated by p38- alpha/MAPK14 and p38-beta/MAPK11. An explanation for these discrepancies, might be that the interaction with p38 MAPK kinases is weak and occurs only under specific conditions.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 16.87 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 552.94 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -325.20506-0.643 Picture PostScript Text
3' UTR -73.23363-0.202 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF06293 - Lipopolysaccharide kinase (Kdo/WaaP) family
PF07714 - Protein tyrosine kinase

SCOP Domains:
47473 - EF-hand
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on Q8IW41
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0002039 p53 binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004683 calmodulin-dependent protein kinase activity
GO:0004708 MAP kinase kinase activity
GO:0005515 protein binding
GO:0005516 calmodulin binding
GO:0005524 ATP binding
GO:0009931 calcium-dependent protein serine/threonine kinase activity
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0051019 mitogen-activated protein kinase binding

Biological Process:
GO:0000165 MAPK cascade
GO:0000187 activation of MAPK activity
GO:0006417 regulation of translation
GO:0006468 protein phosphorylation
GO:0007165 signal transduction
GO:0007166 cell surface receptor signaling pathway
GO:0007265 Ras protein signal transduction
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0032007 negative regulation of TOR signaling
GO:0032212 positive regulation of telomere maintenance via telomerase
GO:0046777 protein autophosphorylation
GO:0051973 positive regulation of telomerase activity
GO:0090400 stress-induced premature senescence
GO:1901796 regulation of signal transduction by p53 class mediator
GO:1904355 positive regulation of telomere capping

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK122767 - Homo sapiens cDNA FLJ16306 fis, clone PUAEN2003954, highly similar to MAP kinase-activated protein kinase 5 (EC 2.7.11.1).
BC041049 - Homo sapiens mitogen-activated protein kinase-activated protein kinase 5, mRNA (cDNA clone MGC:52129 IMAGE:4909021), complete cds.
BC047284 - Homo sapiens mitogen-activated protein kinase-activated protein kinase 5, mRNA (cDNA clone MGC:54058 IMAGE:4997201), complete cds.
KJ892558 - Synthetic construct Homo sapiens clone ccsbBroadEn_01952 MAPKAPK5 gene, encodes complete protein.
KJ905355 - Synthetic construct Homo sapiens clone ccsbBroadEn_14902 MAPKAPK5 gene, encodes complete protein.
BC000833 - Homo sapiens, clone IMAGE:3455871, mRNA, partial cds.
AL110301 - Homo sapiens mRNA; cDNA DKFZp564J1022 (from clone DKFZp564J1022); partial cds.
JD462544 - Sequence 443568 from Patent EP1572962.
JD394424 - Sequence 375448 from Patent EP1572962.
JD200789 - Sequence 181813 from Patent EP1572962.
CU690384 - Synthetic construct Homo sapiens gateway clone IMAGE:100021424 5' read MAPKAPK5 mRNA.
JD284330 - Sequence 265354 from Patent EP1572962.
JD557090 - Sequence 538114 from Patent EP1572962.
JD091328 - Sequence 72352 from Patent EP1572962.
JD562428 - Sequence 543452 from Patent EP1572962.
JD302250 - Sequence 283274 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04010 - MAPK signaling pathway

Reactome (by CSHL, EBI, and GO)

Protein Q8IW41 (Reactome details) participates in the following event(s):

R-HSA-5687088 PKA phosphorylates MAPKAPK5
R-HSA-5687091 p-S MAPK6,4 binds MAPKAPK5
R-HSA-5690245 p-T182 MAPKAPK5 binds DNAJB1
R-HSA-5692770 SEPT7 binds p-S189 MAPK6 and p-T182 MAPKAPK5
R-HSA-5692781 p-S189 MAPK6:p-T182 MAPKAPK5 bind KALRN
R-HSA-3238999 Activated human MKK3/MKK6 phosphorylates p38 MAPK complexed with MAPKAPK5
R-HSA-3239019 Active p38 MAPK phosphorylates MAPKAPK5
R-HSA-5687094 p-S MAPK6,4 phosphorylate MAPKAPK5
R-HSA-5692779 p-S182 MAPKAPK5 phosphorylates FOXO1
R-HSA-5690250 p-T182-MAPKAPK5 phoshphorylates DNAJB1
R-HSA-5692768 MAPKAPK5 phosphorylates KALRN
R-HSA-5687101 p-T182 MAPKAPK5 phosphorylates FOXO3
R-HSA-3239014 MAPKAPK5 phosphorylates TP53
R-HSA-5692775 SEPT7:p-S189 MAPK6:p-T182 MAPKAPK5 phosphorylates CDC42EPs
R-HSA-5687121 p-S MAPKAPK5 phosphorylates HSPB1
R-HSA-5687128 MAPK6/MAPK4 signaling
R-HSA-2559580 Oxidative Stress Induced Senescence
R-HSA-5683057 MAPK family signaling cascades
R-HSA-2559583 Cellular Senescence
R-HSA-162582 Signal Transduction
R-HSA-6804756 Regulation of TP53 Activity through Phosphorylation
R-HSA-2262752 Cellular responses to stress
R-HSA-5633007 Regulation of TP53 Activity
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: B3KVA5, MAPK5_HUMAN, NM_139078, NP_620777, O60491, PRAK, Q86X46, Q8IW41, Q9BVX9, Q9UG86, uc001tta.3
UCSC ID: uc001tta.4
RefSeq Accession: NM_139078
Protein: Q8IW41 (aka MAPK5_HUMAN or MKK5_HUMAN)
CCDS: CCDS44975.1, CCDS44976.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_139078.2
exon count: 14CDS single in 3' UTR: no RNA size: 2313
ORF size: 1422CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2819.00frame shift in genome: no % Coverage: 99.05
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.