Human Gene RP4-813D12.3 (uc010gir.3)
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Sequence and Links to Tools and Databases
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Primer design for this transcript
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Common Gene Haplotype Alleles
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Press "+" in the title bar above to open this section.
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
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The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
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Descriptions from all associated GenBank mRNAs
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BC047656 - Homo sapiens cDNA clone IMAGE:5263608. BC037891 - Homo sapiens cDNA clone IMAGE:5275266. JD074062 - Sequence 55086 from Patent EP1572962. JD196146 - Sequence 177170 from Patent EP1572962. JD045238 - Sequence 26262 from Patent EP1572962. JD196058 - Sequence 177082 from Patent EP1572962. JD436944 - Sequence 417968 from Patent EP1572962. JD459363 - Sequence 440387 from Patent EP1572962. JD409844 - Sequence 390868 from Patent EP1572962. JD385793 - Sequence 366817 from Patent EP1572962. JD397381 - Sequence 378405 from Patent EP1572962. JD126339 - Sequence 107363 from Patent EP1572962. JD130143 - Sequence 111167 from Patent EP1572962. JD514284 - Sequence 495308 from Patent EP1572962. JD071355 - Sequence 52379 from Patent EP1572962. JD072157 - Sequence 53181 from Patent EP1572962. JD310972 - Sequence 291996 from Patent EP1572962. JD257381 - Sequence 238405 from Patent EP1572962. JD490218 - Sequence 471242 from Patent EP1572962. JD297624 - Sequence 278648 from Patent EP1572962. JD506278 - Sequence 487302 from Patent EP1572962. JD374338 - Sequence 355362 from Patent EP1572962. JD223649 - Sequence 204673 from Patent EP1572962.
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Other Names for This Gene
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Alternate Gene Symbols: BC037891, uc010gir.2 UCSC ID: uc010gir.3 Representative RNA: BC037891
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Gene Model Information
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category:
| coding
| nonsense-mediated-decay:
| no
| RNA accession:
| BC037891.1
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exon count:
| 2 | CDS single in 3' UTR:
| no
| RNA size:
| 1184 |
ORF size:
| 396 | CDS single in intron:
| no
| Alignment % ID:
| 99.48 |
txCdsPredict score:
| 662.00 | frame shift in genome:
| no
| % Coverage:
| 98.23 |
has start codon:
| yes
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| yes
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 0 | # strange splices:
| 0 |
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Click here
for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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