Human Gene RP4-813D12.3 (uc010gir.3)
  Description: Homo sapiens cDNA clone IMAGE:5275266.
Transcript (Including UTRs)
   Position: hg19 chr20:55,841,853-55,858,053 Size: 16,201 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr20:55,857,639-55,858,034 Size: 396 Coding Exon Count: 1 

Page IndexSequence and LinksPrimersGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:55,841,853-55,858,053)mRNA (may differ from genome)Protein (131 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
GeneCardsMGIPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.73 RPKM in Brain - Anterior cingulate cortex (BA24)
Total median expression: 17.61 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -282.79750-0.377 Picture PostScript Text
3' UTR 0.00190.000 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC047656 - Homo sapiens cDNA clone IMAGE:5263608.
BC037891 - Homo sapiens cDNA clone IMAGE:5275266.
JD074062 - Sequence 55086 from Patent EP1572962.
JD196146 - Sequence 177170 from Patent EP1572962.
JD045238 - Sequence 26262 from Patent EP1572962.
JD196058 - Sequence 177082 from Patent EP1572962.
JD436944 - Sequence 417968 from Patent EP1572962.
JD459363 - Sequence 440387 from Patent EP1572962.
JD409844 - Sequence 390868 from Patent EP1572962.
JD385793 - Sequence 366817 from Patent EP1572962.
JD397381 - Sequence 378405 from Patent EP1572962.
JD126339 - Sequence 107363 from Patent EP1572962.
JD130143 - Sequence 111167 from Patent EP1572962.
JD514284 - Sequence 495308 from Patent EP1572962.
JD071355 - Sequence 52379 from Patent EP1572962.
JD072157 - Sequence 53181 from Patent EP1572962.
JD310972 - Sequence 291996 from Patent EP1572962.
JD257381 - Sequence 238405 from Patent EP1572962.
JD490218 - Sequence 471242 from Patent EP1572962.
JD297624 - Sequence 278648 from Patent EP1572962.
JD506278 - Sequence 487302 from Patent EP1572962.
JD374338 - Sequence 355362 from Patent EP1572962.
JD223649 - Sequence 204673 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC037891, uc010gir.2
UCSC ID: uc010gir.3
Representative RNA: BC037891

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC037891.1
exon count: 2CDS single in 3' UTR: no RNA size: 1184
ORF size: 396CDS single in intron: no Alignment % ID: 99.48
txCdsPredict score: 662.00frame shift in genome: no % Coverage: 98.23
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.