Human Gene DQ598910 (uc002djt.2)
  Description: Homo sapiens cDNA FLJ30147 fis, clone BRACE2000266.
Transcript (Including UTRs)
   Position: hg19 chr16:21,875,623-21,877,693 Size: 2,071 Total Exon Count: 1 Strand: -


Page IndexSequence and LinksPrimersMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:21,875,623-21,877,693)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaExonPrimerH-INV
PubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK054709 - Homo sapiens cDNA FLJ30147 fis, clone BRACE2000266.
BC051311 - Homo sapiens hypothetical gene LOC283846, mRNA (cDNA clone IMAGE:5815383).
BC039199 - Homo sapiens hypothetical gene LOC283846, mRNA (cDNA clone IMAGE:4700990), with apparent retained intron.
JD319538 - Sequence 300562 from Patent EP1572962.
JD319537 - Sequence 300561 from Patent EP1572962.
AK123481 - Homo sapiens cDNA FLJ41487 fis, clone BRTHA2004350.
JD415299 - Sequence 396323 from Patent EP1572962.
JD514057 - Sequence 495081 from Patent EP1572962.
JD435351 - Sequence 416375 from Patent EP1572962.
JD522076 - Sequence 503100 from Patent EP1572962.
JD514389 - Sequence 495413 from Patent EP1572962.
JD524657 - Sequence 505681 from Patent EP1572962.
JD448602 - Sequence 429626 from Patent EP1572962.
JD196418 - Sequence 177442 from Patent EP1572962.
JD414439 - Sequence 395463 from Patent EP1572962.
DQ584116 - Homo sapiens piRNA piR-51228, complete sequence.
DQ598910 - Homo sapiens piRNA piR-36976, complete sequence.

-  Other Names for This Gene
  UCSC ID: uc002djt.2
Representative RNA: DQ598910

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: DQ598910.1
exon count: 1CDS single in 3' UTR: no RNA size: 27
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 262.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 5
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.