Human Gene LOC400927 (uc011ant.3) Description and Page Index
  Description: Homo sapiens TPTE and PTEN homologous inositol lipid phosphatase pseudogene (LOC400927), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr22:38,742,940-38,794,931 Size: 51,992 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr22:38,743,542-38,766,049 Size: 22,508 Coding Exon Count: 3 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:38,742,940-38,794,931)mRNA (may differ from genome)Protein (89 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerGeneCardsGeneNetworkH-INVLynx
MGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.29 RPKM in Nerve - Tibial
Total median expression: 61.85 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -88.40256-0.345 Picture PostScript Text
3' UTR -230.64602-0.383 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
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-  Descriptions from all associated GenBank mRNAs
  AK092269 - Homo sapiens cDNA FLJ34950 fis, clone NT2RP7017284, highly similar to Casein kinase I isoform epsilon (EC 2.7.11.1).
AK310303 - Homo sapiens cDNA, FLJ17345.
AK307225 - Homo sapiens cDNA, FLJ97173.
AK124064 - Homo sapiens cDNA FLJ42070 fis, clone SYNOV2012326.
JD129470 - Sequence 110494 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK307225, uc011ant.2
UCSC ID: uc011ant.3
RefSeq Accession: NR_002821

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK307225.1
exon count: 6CDS single in 3' UTR: no RNA size: 1075
ORF size: 270CDS single in intron: no Alignment % ID: 99.72
txCdsPredict score: 740.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.