Human Gene OCEL1 (uc002nfp.3)
Description: Homo sapiens occludin/ELL domain containing 1 (OCEL1), mRNA.
Transcript (Including UTRs)
Position: hg19 chr19:17,337,055-17,340,028 Size: 2,974 Total Exon Count: 6 Strand: +
Coding Region
Position: hg19 chr19:17,337,057-17,339,734 Size: 2,678 Coding Exon Count: 6
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: OCEL1_HUMAN
DESCRIPTION: RecName: Full=Occludin/ELL domain-containing protein 1;
SIMILARITY: Belongs to the ELL/occludin family.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR010844 - Occludin_RNApol2_elong_fac_ELL
Pfam Domains: PF07303 - Occludin homology domain
ModBase Predicted Comparative 3D Structure on Q9H607
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
BC029361 - Homo sapiens occludin/ELL domain containing 1, mRNA (cDNA clone MGC:32535 IMAGE:4064124), complete cds.BC038945 - Homo sapiens occludin/ELL domain containing 1, mRNA (cDNA clone IMAGE:5200893), with apparent retained intron.AK026362 - Homo sapiens cDNA: FLJ22709 fis, clone HSI13338.CU688632 - Synthetic construct Homo sapiens gateway clone IMAGE:100022139 5' read OCEL1 mRNA.HQ447782 - Synthetic construct Homo sapiens clone IMAGE:100071123; CCSB013178_01 occludin/ELL domain containing 1 (OCEL1) gene, encodes complete protein.BC004121 - Homo sapiens occludin/ELL domain containing 1, mRNA (cDNA clone IMAGE:3927742), complete cds.AF109191 - Homo sapiens FWP009 mRNA, complete cds.JD390849 - Sequence 371873 from Patent EP1572962.JD535222 - Sequence 516246 from Patent EP1572962.JD353918 - Sequence 334942 from Patent EP1572962.JD403070 - Sequence 384094 from Patent EP1572962.JD378800 - Sequence 359824 from Patent EP1572962.JD525953 - Sequence 506977 from Patent EP1572962.JD414603 - Sequence 395627 from Patent EP1572962.JD514566 - Sequence 495590 from Patent EP1572962.JD044999 - Sequence 26023 from Patent EP1572962.JD174998 - Sequence 156022 from Patent EP1572962.JD225644 - Sequence 206668 from Patent EP1572962.JD385939 - Sequence 366963 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: NM_024578, NP_078854, OCEL1_HUMAN, Q9H607UCSC ID: uc002nfp.3RefSeq Accession: NM_024578
Protein: Q9H607
(aka OCEL1_HUMAN)
CCDS: CCDS12351.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_024578.1
exon count:
6 CDS single in 3' UTR:
no
RNA size:
1124
ORF size:
795 CDS single in intron:
no
Alignment % ID:
99.91
txCdsPredict score:
1690.00 frame shift in genome:
no
% Coverage:
97.06
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.