Human Gene TMED4 (uc003tli.3)
  Description: Homo sapiens transmembrane emp24 protein transport domain containing 4 (TMED4), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr7:44,618,762-44,621,827 Size: 3,066 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr7:44,619,078-44,621,805 Size: 2,728 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:44,618,762-44,621,827)mRNA (may differ from genome)Protein (227 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMGI
neXtProtOMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TMED4_HUMAN
DESCRIPTION: RecName: Full=Transmembrane emp24 domain-containing protein 4; AltName: Full=Endoplasmic reticulum stress-response protein 25; Short=ERS25; AltName: Full=GMP25iso; AltName: Full=Putative NF-kappa-B-activating protein 156; AltName: Full=p24 family protein alpha-3; Short=p24alpha3; Flags: Precursor;
FUNCTION: Involved in vesicular protein trafficking, mainly in the early secretory pathway. targeting. Involved in the maintenance of the Golgi apparatus. Appears to play a role in the biosynthesis of secreted cargo including processing. Involved in endoplasmic reticulum stress response. May play a role in the regulation of heat-shock response and apoptosis (By similarity).
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Single-pass type I membrane protein (By similarity).
SIMILARITY: Belongs to the EMP24/GP25L family.
SIMILARITY: Contains 1 GOLD domain.
SEQUENCE CAUTION: Sequence=AAP20105.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAC77362.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 51.99 RPKM in Thyroid
Total median expression: 1227.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -8.6022-0.391 Picture PostScript Text
3' UTR -64.54316-0.204 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009038 - GOLD

Pfam Domains:
PF01105 - emp24/gp25L/p24 family/GOLD

ModBase Predicted Comparative 3D Structure on Q7Z7H5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserGenome BrowserNo orthologNo ortholog
Gene Details  Gene Details  
Gene Sorter  Gene Sorter  
  EnsemblFlyBase  
  Protein SequenceProtein Sequence  
  AlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0015031 protein transport
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling

Cellular Component:
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC035467 - Homo sapiens transmembrane emp24 protein transport domain containing 4, mRNA (cDNA clone IMAGE:3866125).
BX647965 - Homo sapiens mRNA; cDNA DKFZp686B1752 (from clone DKFZp686B1752).
AB097009 - Homo sapiens mRNA for putative NFkB activating protein, complete cds, clone: 156.
BC053583 - Homo sapiens transmembrane emp24 protein transport domain containing 4, mRNA (cDNA clone IMAGE:5184403).
AK290125 - Homo sapiens cDNA FLJ76232 complete cds, highly similar to Homo sapiens transmembrane emp24 protein transport domain containing 4 (TMED4), mRNA.
AK294122 - Homo sapiens cDNA FLJ53032 complete cds, highly similar to Transmembrane emp24 domain-containing protein 4 precursor.
BC052641 - Homo sapiens transmembrane emp24 protein transport domain containing 4, mRNA (cDNA clone MGC:61684 IMAGE:5223093), complete cds.
JD184926 - Sequence 165950 from Patent EP1572962.
BC057851 - Homo sapiens transmembrane emp24 protein transport domain containing 4, mRNA (cDNA clone MGC:71867 IMAGE:4798030), complete cds.
JD369363 - Sequence 350387 from Patent EP1572962.
JD378682 - Sequence 359706 from Patent EP1572962.
JD522024 - Sequence 503048 from Patent EP1572962.
JD262885 - Sequence 243909 from Patent EP1572962.
KJ895874 - Synthetic construct Homo sapiens clone ccsbBroadEn_05268 TMED4 gene, encodes complete protein.
AB590072 - Synthetic construct DNA, clone: pFN21AE0462, Homo sapiens TMED4 gene for transmembrane emp24 protein transport domain containing 4, without stop codon, in Flexi system.
AM393201 - Synthetic construct Homo sapiens clone IMAGE:100002329 for hypothetical protein (TMED4 gene).
AM393715 - Synthetic construct Homo sapiens clone IMAGE:100002330 for hypothetical protein (TMED4 gene).
DQ579821 - Homo sapiens piRNA piR-47933, complete sequence.
AY191223 - Homo sapiens transformation-related gene 7 mRNA, complete cds.
AK074557 - Homo sapiens cDNA FLJ90076 fis, clone HEMBA1004444, highly similar to Putative NFkB activating protein HNLF.
BC025705 - Homo sapiens transmembrane emp24 protein transport domain containing 4, mRNA (cDNA clone IMAGE:5223654), with apparent retained intron.
JD141058 - Sequence 122082 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A4D2K8, B4DFJ4, ERS25, NM_182547, NP_872353, Q56VW3, Q7Z432, Q7Z7H5, Q8N2P6, TMED4_HUMAN
UCSC ID: uc003tli.3
RefSeq Accession: NM_182547
Protein: Q7Z7H5 (aka TMED4_HUMAN)
CCDS: CCDS5493.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_182547.2
exon count: 5CDS single in 3' UTR: no RNA size: 1048
ORF size: 684CDS single in intron: no Alignment % ID: 99.80
txCdsPredict score: 1568.00frame shift in genome: no % Coverage: 97.52
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.