Human Gene RNF138P1 (uc003jqc.1) Description and Page Index
  Description: Homo sapiens ring finger protein 138, E3 ubiquitin protein ligase pseudogene 1 (RNF138P1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr5:54,824,670-54,830,370 Size: 5,701 Total Exon Count: 1 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:54,824,670-54,830,370)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneNetworkHGNC
LynxPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.98 RPKM in Prostate
Total median expression: 16.37 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC040295 - Homo sapiens ring finger protein 138 pseudogene 1, mRNA (cDNA clone IMAGE:4826852).
JD082444 - Sequence 63468 from Patent EP1572962.
JD349618 - Sequence 330642 from Patent EP1572962.
DL490831 - Novel nucleic acids.
JD432746 - Sequence 413770 from Patent EP1572962.
JD160427 - Sequence 141451 from Patent EP1572962.
JD040475 - Sequence 21499 from Patent EP1572962.
JD022921 - Sequence 3945 from Patent EP1572962.
JD032635 - Sequence 13659 from Patent EP1572962.
JD396175 - Sequence 377199 from Patent EP1572962.
JD489080 - Sequence 470104 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_001575
UCSC ID: uc003jqc.1
RefSeq Accession: NR_001575

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_001575.1
exon count: 1CDS single in 3' UTR: no RNA size: 5701
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 365.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.