Human Gene LOC100287639 (uc003dro.1)
  Description: Homo sapiens methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene (LOC100287639), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr3:95,373,267-95,402,037 Size: 28,771 Total Exon Count: 5 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:95,373,267-95,402,037)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerH-INVLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.76 RPKM in Spleen
Total median expression: 1.92 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK092228 - Homo sapiens cDNA FLJ34909 fis, clone NT2RI2009301, moderately similar to BIFUNCTIONAL METHYLENETETRAHYDROFOLATE DEHYDROGENASE/CYCLOHYDROLASE, MITOCHONDRIAL PRECURSOR.
AX747417 - Sequence 942 from Patent EP1308459.
JD145548 - Sequence 126572 from Patent EP1572962.
JD308570 - Sequence 289594 from Patent EP1572962.
JD511367 - Sequence 492391 from Patent EP1572962.
JD366130 - Sequence 347154 from Patent EP1572962.
JD310311 - Sequence 291335 from Patent EP1572962.
JD561931 - Sequence 542955 from Patent EP1572962.
JD189582 - Sequence 170606 from Patent EP1572962.
JD092991 - Sequence 74015 from Patent EP1572962.
JD385158 - Sequence 366182 from Patent EP1572962.
JD423347 - Sequence 404371 from Patent EP1572962.
DQ577890 - Homo sapiens piRNA piR-46002, complete sequence.
JD318548 - Sequence 299572 from Patent EP1572962.
JD366285 - Sequence 347309 from Patent EP1572962.
JD292539 - Sequence 273563 from Patent EP1572962.
JD365233 - Sequence 346257 from Patent EP1572962.
JD451718 - Sequence 432742 from Patent EP1572962.
JD448213 - Sequence 429237 from Patent EP1572962.
JD332246 - Sequence 313270 from Patent EP1572962.
JD065944 - Sequence 46968 from Patent EP1572962.
JD472562 - Sequence 453586 from Patent EP1572962.
JD294224 - Sequence 275248 from Patent EP1572962.
JD522498 - Sequence 503522 from Patent EP1572962.
JD079527 - Sequence 60551 from Patent EP1572962.
JD243198 - Sequence 224222 from Patent EP1572962.
JD136160 - Sequence 117184 from Patent EP1572962.
JD117520 - Sequence 98544 from Patent EP1572962.
JD457017 - Sequence 438041 from Patent EP1572962.
JD473869 - Sequence 454893 from Patent EP1572962.
JD532504 - Sequence 513528 from Patent EP1572962.
JD495947 - Sequence 476971 from Patent EP1572962.
JD165722 - Sequence 146746 from Patent EP1572962.
JD083264 - Sequence 64288 from Patent EP1572962.
JD379136 - Sequence 360160 from Patent EP1572962.
JD410100 - Sequence 391124 from Patent EP1572962.
JD359941 - Sequence 340965 from Patent EP1572962.
JD255278 - Sequence 236302 from Patent EP1572962.
JD208676 - Sequence 189700 from Patent EP1572962.
JD158887 - Sequence 139911 from Patent EP1572962.
JD522046 - Sequence 503070 from Patent EP1572962.
JD351424 - Sequence 332448 from Patent EP1572962.
JD512657 - Sequence 493681 from Patent EP1572962.
JD512658 - Sequence 493682 from Patent EP1572962.
JD412710 - Sequence 393734 from Patent EP1572962.
JD197759 - Sequence 178783 from Patent EP1572962.
JD212370 - Sequence 193394 from Patent EP1572962.
JD509715 - Sequence 490739 from Patent EP1572962.
JD098818 - Sequence 79842 from Patent EP1572962.
JD143796 - Sequence 124820 from Patent EP1572962.
JD107574 - Sequence 88598 from Patent EP1572962.
JD505852 - Sequence 486876 from Patent EP1572962.
JD505851 - Sequence 486875 from Patent EP1572962.
JD356387 - Sequence 337411 from Patent EP1572962.
JD074165 - Sequence 55189 from Patent EP1572962.
JD201639 - Sequence 182663 from Patent EP1572962.
JD245709 - Sequence 226733 from Patent EP1572962.
JD091100 - Sequence 72124 from Patent EP1572962.
JD460962 - Sequence 441986 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_077228
UCSC ID: uc003dro.1
RefSeq Accession: NR_077228

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_077228.1
exon count: 5CDS single in 3' UTR: no RNA size: 2595
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2.50frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.