Human Gene ASZ1 (uc003vjb.2)
  Description: Homo sapiens ankyrin repeat, SAM and basic leucine zipper domain containing 1 (ASZ1), transcript variant 1, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr7:117,003,276-117,067,577 Size: 64,302 Total Exon Count: 13 Strand: -
Coding Region
   Position: hg19 chr7:117,003,650-117,067,514 Size: 63,865 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:117,003,276-117,067,577)mRNA (may differ from genome)Protein (475 aa)
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WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ASZ1_HUMAN
DESCRIPTION: RecName: Full=Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1; AltName: Full=Ankyrin-like protein 1; AltName: Full=Germ cell-specific ankyrin, SAM and basic leucine zipper domain-containing protein;
FUNCTION: Plays a central role during spermatogenesis by repressing transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Its association with pi-bodies suggests a participation in the primary piRNAs metabolic process. Required prior to the pachytene stage to facilitate the production of multiple types of piRNAs, including those associated with repeats involved in regulation of retrotransposons. May act by mediating protein-protein interactions during germ cell maturation (By similarity).
SUBUNIT: Interacts with DDX4, PIWIL1, RANBP9 and TDRD1 (By similarity).
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Note=Component of the meiotic nuage, also named P granule, a germ-cell-specific organelle required to repress transposon during meiosis. Specifically localizes to pi-bodies, a subset of the nuage which contains primary piRNAs (By similarity).
TISSUE SPECIFICITY: Expressed exclusively in the testis and ovary and at higher levels in the adult testis compared with the adult ovary.
SIMILARITY: Contains 6 ANK repeats.
SIMILARITY: Contains 1 SAM (sterile alpha motif) domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): ASZ1
CDC HuGE Published Literature: ASZ1
Positive Disease Associations: Cardiovascular Diseases , Coronary Artery Disease
Related Studies:
  1. Cardiovascular Diseases
    Martin G Larson et al. BMC medical genetics 2007, Framingham Heart Study 100K project: genome-wide associations for cardiovascular disease outcomes., BMC medical genetics. [PubMed 17903304]
    No association attained genome-wide significance, but several intriguing findings emerged. Notably, we replicated associations of chromosome 9p21 with major CVD. Additional studies are needed to validate these results. Finding genetic variants associated with CVD may point to novel disease pathways and identify potential targeted preventive therapies.
  2. Coronary Artery Disease
    Heribert Schunkert et al. Nature genetics 2011, Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease., Nature genetics. [PubMed 21378990]

-  MalaCards Disease Associations
  MalaCards Gene Search: ASZ1
Diseases sorted by gene-association score: usher syndrome, type 1b (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.14 RPKM in Testis
Total median expression: 11.22 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -27.5063-0.437 Picture PostScript Text
3' UTR -59.06374-0.158 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002110 - Ankyrin_rpt
IPR020683 - Ankyrin_rpt-contain_dom
IPR013761 - SAM/pointed
IPR011510 - SAM_2

Pfam Domains:
PF00023 - Ankyrin repeat
PF00536 - SAM domain (Sterile alpha motif)
PF07647 - SAM domain (Sterile alpha motif)
PF12796 - Ankyrin repeats (3 copies)
PF13606 - Ankyrin repeat
PF13637 - Ankyrin repeats (many copies)
PF13857 - Ankyrin repeats (many copies)

SCOP Domains:
47769 - SAM/Pointed domain
48403 - Ankyrin repeat

ModBase Predicted Comparative 3D Structure on Q8WWH4
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
 Protein SequenceProtein Sequence   
 AlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity

Biological Process:
GO:0007140 male meiosis
GO:0007165 signal transduction
GO:0007275 multicellular organism development
GO:0007283 spermatogenesis
GO:0030154 cell differentiation
GO:0031047 gene silencing by RNA
GO:0034587 piRNA metabolic process
GO:0043046 DNA methylation involved in gamete generation
GO:0051321 meiotic cell cycle

Cellular Component:
GO:0005737 cytoplasm
GO:0071546 pi-body


-  Descriptions from all associated GenBank mRNAs
  AF461259 - Homo sapiens GASZ (GASZ) mRNA, complete cds.
LP896491 - Sequence 1355 from Patent EP3253886.
BC028695 - Homo sapiens ankyrin repeat, SAM and basic leucine zipper domain containing 1, mRNA (cDNA clone IMAGE:4838640).
BC098399 - Homo sapiens ankyrin repeat, SAM and basic leucine zipper domain containing 1, mRNA (cDNA clone IMAGE:5298631), with apparent retained intron.
AK093445 - Homo sapiens cDNA FLJ36126 fis, clone TESTI2024443, weakly similar to ANKYRIN 1.
AX748131 - Sequence 1656 from Patent EP1308459.
BC034963 - Homo sapiens ankyrin repeat, SAM and basic leucine zipper domain containing 1, mRNA (cDNA clone MGC:26634 IMAGE:4824818), complete cds.
BC068488 - Homo sapiens ankyrin repeat, SAM and basic leucine zipper domain containing 1, mRNA (cDNA clone IMAGE:5298095).
BC126186 - Homo sapiens ankyrin repeat, SAM and basic leucine zipper domain containing 1, mRNA (cDNA clone MGC:161464 IMAGE:8991902), complete cds.
BC126188 - Homo sapiens ankyrin repeat, SAM and basic leucine zipper domain containing 1, mRNA (cDNA clone MGC:161466 IMAGE:8991904), complete cds.
BC144207 - Homo sapiens cDNA clone IMAGE:9052727, with apparent retained intron.
BC144212 - Homo sapiens ankyrin repeat, SAM and basic leucine zipper domain containing 1, mRNA (cDNA clone MGC:177749 IMAGE:9052732), complete cds.
HQ258436 - Synthetic construct Homo sapiens clone IMAGE:100072865 ankyrin repeat, SAM and basic leucine zipper domain containing 1 (ASZ1) gene, encodes complete protein.
KJ895514 - Synthetic construct Homo sapiens clone ccsbBroadEn_04908 ASZ1 gene, encodes complete protein.
KJ901154 - Synthetic construct Homo sapiens clone ccsbBroadEn_10548 ASZ1 gene, encodes complete protein.
JD096989 - Sequence 78013 from Patent EP1572962.
JD292682 - Sequence 273706 from Patent EP1572962.
JD428688 - Sequence 409712 from Patent EP1572962.
JD041903 - Sequence 22927 from Patent EP1572962.
JD168142 - Sequence 149166 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8WWH4 (Reactome details) participates in the following event(s):

R-HSA-5603062 Complexed PIWIL2 binds pre-piRNA
R-HSA-5601910 Complexed PIWIL2:2'-O-methyl-piRNA cleaves transposon RNA
R-HSA-5629218 HENMT1 methylates 2' hydroxyl at 3' end of piRNA in 6xMeR-PIWIL2:piRNA:TDRD1:TDRD12:DDX4:ASZ:MOV10L1
R-HSA-5601884 PIWI-interacting RNA (piRNA) biogenesis
R-HSA-211000 Gene Silencing by RNA
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: A0AV27, A4D0V0, ALP1, ANKL1, ASZ1_HUMAN, C7orf7, GASZ, NM_130768, NP_570124, Q8WWH4
UCSC ID: uc003vjb.2
RefSeq Accession: NM_130768
Protein: Q8WWH4 (aka ASZ1_HUMAN)
CCDS: CCDS5772.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_130768.2
exon count: 13CDS single in 3' UTR: no RNA size: 1865
ORF size: 1428CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2937.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.