Human Gene FN3KRP (uc002kfu.3)
  Description: Homo sapiens fructosamine 3 kinase related protein (FN3KRP), transcript variant 1, mRNA.
RefSeq Summary (NM_024619): A high concentration of glucose can result in non-enzymatic oxidation of proteins by reaction of glucose and lysine residues (glycation). Proteins modified in this way are less active or functional. This gene encodes an enzyme which catalyzes the phosphorylation of psicosamines and ribulosamines compared to the neighboring gene which encodes a highly similar enzyme, fructosamine-3-kinase, which has different substrate specificity. The activity of both enzymes may result in deglycation of proteins to restore their function. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2012].
Transcript (Including UTRs)
   Position: hg19 chr17:80,674,582-80,685,893 Size: 11,312 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr17:80,674,632-80,685,047 Size: 10,416 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:80,674,582-80,685,893)mRNA (may differ from genome)Protein (309 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMGI
neXtProtOMIMPubMedReactomeTreefamUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KT3K_HUMAN
DESCRIPTION: RecName: Full=Ketosamine-3-kinase; EC=2.7.1.-; AltName: Full=Fructosamine-3-kinase-related protein; Short=FN3K-RP; Short=FN3K-related protein;
FUNCTION: Phosphorylates psicosamines and ribulosamines, but not fructosamines, on the third carbon of the sugar moiety. Protein- bound psicosamine 3-phosphates and ribulosamine 3-phosphates are unstable and decompose under physiological conditions. Thus phosphorylation leads to deglycation.
TISSUE SPECIFICITY: Expressed in erythrocytes.
SIMILARITY: Belongs to the fructosamine kinase family.
SEQUENCE CAUTION: Sequence=CAB66566.1; Type=Erroneous termination; Positions=198; Note=Translated as Leu;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.69 RPKM in Brain - Spinal cord (cervical c-1)
Total median expression: 678.86 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -21.2050-0.424 Picture PostScript Text
3' UTR -276.41846-0.327 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016477 - Fructo-/Ketosamine-3-kinase
IPR011009 - Kinase-like_dom

Pfam Domains:
PF01636 - Phosphotransferase enzyme family
PF03881 - Fructosamine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on Q9HA64
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologGenome BrowserNo ortholog
Gene Details   Gene Details 
Gene Sorter   Gene Sorter 
  Ensembl WormBase 
  Protein Sequence Protein Sequence 
  Alignment Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0016301 kinase activity
GO:0016740 transferase activity

Biological Process:
GO:0016310 phosphorylation
GO:0043687 post-translational protein modification

Cellular Component:
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  HM005624 - Homo sapiens clone HTL-S-211a testis secretory sperm-binding protein Li 211a mRNA, complete cds.
AK293523 - Homo sapiens cDNA FLJ57707 complete cds, highly similar to Ketosamine-3-kinase (EC 2.7.1.-).
AK301958 - Homo sapiens cDNA FLJ57651 complete cds, highly similar to Ketosamine-3-kinase (EC 2.7.1.-).
AK315373 - Homo sapiens cDNA, FLJ96419, highly similar to Homo sapiens fructosamine-3-kinase-related protein (FN3KRP), mRNA.
BC007611 - Homo sapiens fructosamine 3 kinase related protein, mRNA (cDNA clone MGC:15694 IMAGE:3351601), complete cds.
AK022233 - Homo sapiens cDNA FLJ12171 fis, clone MAMMA1000670.
AY360465 - Homo sapiens fructosamine-3-kinase-related protein (FN3KRP) mRNA, complete cds.
AL136631 - Homo sapiens mRNA; cDNA DKFZp564D202 (from clone DKFZp564D202).
BC014408 - Homo sapiens fructosamine 3 kinase related protein, mRNA (cDNA clone MGC:19889 IMAGE:4652087), complete cds.
CU676977 - Synthetic construct Homo sapiens gateway clone IMAGE:100023365 5' read FN3KRP mRNA.
AB385548 - Synthetic construct DNA, clone: pF1KB5397, Homo sapiens KT3K gene for ketosamine-3-kinase, complete cds, without stop codon, in Flexi system.
HQ448181 - Synthetic construct Homo sapiens clone IMAGE:100071575; CCSB005273_02 fructosamine-3-kinase-related protein (FN3KRP) gene, encodes complete protein.
KJ894711 - Synthetic construct Homo sapiens clone ccsbBroadEn_04105 FN3KRP gene, encodes complete protein.
KJ905535 - Synthetic construct Homo sapiens clone ccsbBroadEn_15149 FN3KRP gene, encodes complete protein.
CR533461 - Homo sapiens full open reading frame cDNA clone RZPDo834C0619D for gene FN3KRP, fructosamine-3-kinase-related protein; complete cds, incl. stopcodon.
BC001458 - Homo sapiens fructosamine 3 kinase related protein, mRNA (cDNA clone IMAGE:3138711), partial cds.
JD235682 - Sequence 216706 from Patent EP1572962.
JD432757 - Sequence 413781 from Patent EP1572962.
JD507204 - Sequence 488228 from Patent EP1572962.
JD051461 - Sequence 32485 from Patent EP1572962.
JD046039 - Sequence 27063 from Patent EP1572962.
JD390096 - Sequence 371120 from Patent EP1572962.
JD185633 - Sequence 166657 from Patent EP1572962.
JD262310 - Sequence 243334 from Patent EP1572962.
JD350792 - Sequence 331816 from Patent EP1572962.
JD410030 - Sequence 391054 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9HA64 (Reactome details) participates in the following event(s):

R-HSA-6788855 FN3KRP phosphorylates PsiAm, RibAm
R-HSA-163841 Gamma carboxylation, hypusine formation and arylsulfatase activation
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: KT3K_HUMAN, NM_024619, NP_078895, Q969F4, Q9H0U7, Q9HA64
UCSC ID: uc002kfu.3
RefSeq Accession: NM_024619
Protein: Q9HA64 (aka KT3K_HUMAN)
CCDS: CCDS11817.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_024619.3
exon count: 6CDS single in 3' UTR: no RNA size: 1844
ORF size: 930CDS single in intron: no Alignment % ID: 99.84
txCdsPredict score: 2060.00frame shift in genome: no % Coverage: 99.02
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.