Human Gene MGC27345 (uc031szb.1)
  Description: Homo sapiens uncharacterized protein MGC27345 (MGC27345), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr7:127,937,738-127,947,816 Size: 10,079 Total Exon Count: 1 Strand: -


Page IndexSequence and LinksPrimersMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:127,937,738-127,947,816)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSExonPrimer
H-INVLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  CR936803 - Homo sapiens mRNA; cDNA DKFZp781G2113 (from clone DKFZp781G2113).
JD340775 - Sequence 321799 from Patent EP1572962.
JD291598 - Sequence 272622 from Patent EP1572962.
JD431206 - Sequence 412230 from Patent EP1572962.
LP896607 - Sequence 1471 from Patent EP3253886.
AK001384 - Homo sapiens cDNA FLJ10522 fis, clone NT2RP2000845.
BC024231 - Homo sapiens hypothetical protein MGC27345, mRNA (cDNA clone MGC:27345 IMAGE:4670552), complete cds.
JD085238 - Sequence 66262 from Patent EP1572962.
JD499016 - Sequence 480040 from Patent EP1572962.
JD309730 - Sequence 290754 from Patent EP1572962.
JD098803 - Sequence 79827 from Patent EP1572962.
JD052022 - Sequence 33046 from Patent EP1572962.
JD382195 - Sequence 363219 from Patent EP1572962.
JD456792 - Sequence 437816 from Patent EP1572962.
JD075149 - Sequence 56173 from Patent EP1572962.
JD285451 - Sequence 266475 from Patent EP1572962.
JD272880 - Sequence 253904 from Patent EP1572962.
JD235436 - Sequence 216460 from Patent EP1572962.
JD331017 - Sequence 312041 from Patent EP1572962.
JD545490 - Sequence 526514 from Patent EP1572962.
JD364354 - Sequence 345378 from Patent EP1572962.
JD417135 - Sequence 398159 from Patent EP1572962.
JD398260 - Sequence 379284 from Patent EP1572962.
JD514146 - Sequence 495170 from Patent EP1572962.
JD514145 - Sequence 495169 from Patent EP1572962.
JD384781 - Sequence 365805 from Patent EP1572962.
JD321703 - Sequence 302727 from Patent EP1572962.
JD095235 - Sequence 76259 from Patent EP1572962.
JD268830 - Sequence 249854 from Patent EP1572962.
JD550370 - Sequence 531394 from Patent EP1572962.
JD562198 - Sequence 543222 from Patent EP1572962.
JD166187 - Sequence 147211 from Patent EP1572962.
JD262548 - Sequence 243572 from Patent EP1572962.
JD556859 - Sequence 537883 from Patent EP1572962.
JD293535 - Sequence 274559 from Patent EP1572962.
JD234228 - Sequence 215252 from Patent EP1572962.
JD270558 - Sequence 251582 from Patent EP1572962.
JD234227 - Sequence 215251 from Patent EP1572962.
JD550369 - Sequence 531393 from Patent EP1572962.
JD293534 - Sequence 274558 from Patent EP1572962.
JD558198 - Sequence 539222 from Patent EP1572962.
JD063922 - Sequence 44946 from Patent EP1572962.
JD441113 - Sequence 422137 from Patent EP1572962.
JD295620 - Sequence 276644 from Patent EP1572962.
JD129377 - Sequence 110401 from Patent EP1572962.
JD323247 - Sequence 304271 from Patent EP1572962.
JD080114 - Sequence 61138 from Patent EP1572962.
JD339282 - Sequence 320306 from Patent EP1572962.
JD287994 - Sequence 269018 from Patent EP1572962.
JD287993 - Sequence 269017 from Patent EP1572962.
JD430989 - Sequence 412013 from Patent EP1572962.
JD326928 - Sequence 307952 from Patent EP1572962.
JD558521 - Sequence 539545 from Patent EP1572962.
JD350392 - Sequence 331416 from Patent EP1572962.
JD463748 - Sequence 444772 from Patent EP1572962.
JD478498 - Sequence 459522 from Patent EP1572962.
JD543172 - Sequence 524196 from Patent EP1572962.
JD249703 - Sequence 230727 from Patent EP1572962.
JD543171 - Sequence 524195 from Patent EP1572962.
JD174162 - Sequence 155186 from Patent EP1572962.
JD188974 - Sequence 169998 from Patent EP1572962.
DQ599575 - Homo sapiens piRNA piR-37641, complete sequence.
JD247473 - Sequence 228497 from Patent EP1572962.
JD492292 - Sequence 473316 from Patent EP1572962.
JD301351 - Sequence 282375 from Patent EP1572962.
JD091864 - Sequence 72888 from Patent EP1572962.
JD493119 - Sequence 474143 from Patent EP1572962.
JD506645 - Sequence 487669 from Patent EP1572962.
JD153460 - Sequence 134484 from Patent EP1572962.
JD162398 - Sequence 143422 from Patent EP1572962.
JD120001 - Sequence 101025 from Patent EP1572962.
JD202633 - Sequence 183657 from Patent EP1572962.
JD423885 - Sequence 404909 from Patent EP1572962.
JD440382 - Sequence 421406 from Patent EP1572962.
JD334937 - Sequence 315961 from Patent EP1572962.
JD420513 - Sequence 401537 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_046216
UCSC ID: uc031szb.1
RefSeq Accession: NR_046216

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_046216.1
exon count: 1CDS single in 3' UTR: no RNA size: 10079
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 317.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.