Human Gene C8orf33 (uc003zfc.4)
Description: Homo sapiens chromosome 8 open reading frame 33 (C8orf33), mRNA.
Transcript (Including UTRs)
Position: hg19 chr8:146,277,824-146,281,416 Size: 3,593 Total Exon Count: 5 Strand: +
Coding Region
Position: hg19 chr8:146,277,878-146,279,543 Size: 1,666 Coding Exon Count: 5
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: CH033_HUMAN
DESCRIPTION: RecName: Full=UPF0488 protein C8orf33;
SIMILARITY: Belongs to the UPF0488 family.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF15393 - Domain of unknown function (DUF4615)
ModBase Predicted Comparative 3D Structure on Q9H7E9
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AK024642 - Homo sapiens cDNA: FLJ20989 fis, clone CAE01644.BX648996 - Homo sapiens mRNA; cDNA DKFZp686O2184 (from clone DKFZp686O2184).BC010001 - Homo sapiens chromosome 8 open reading frame 33, mRNA (cDNA clone MGC:14956 IMAGE:4135341), complete cds.JD187952 - Sequence 168976 from Patent EP1572962.KJ894605 - Synthetic construct Homo sapiens clone ccsbBroadEn_03999 C8orf33 gene, encodes complete protein.CR457330 - Homo sapiens full open reading frame cDNA clone RZPDo834H129D for gene FLJ20989, hypothetical protein FLJ20989; complete cds, incl. stopcodon.BC015181 - Homo sapiens chromosome 8 open reading frame 33, mRNA (cDNA clone IMAGE:3906149), partial cds.AF086170 - Homo sapiens full length insert cDNA clone ZB85G04.DQ592456 - Homo sapiens piRNA piR-59568, complete sequence.JD503304 - Sequence 484328 from Patent EP1572962.JD300538 - Sequence 281562 from Patent EP1572962.JD199100 - Sequence 180124 from Patent EP1572962.JD073968 - Sequence 54992 from Patent EP1572962.JD309067 - Sequence 290091 from Patent EP1572962.JD023257 - Sequence 4281 from Patent EP1572962.JD025838 - Sequence 6862 from Patent EP1572962.JD550426 - Sequence 531450 from Patent EP1572962.JD453540 - Sequence 434564 from Patent EP1572962.JD035333 - Sequence 16357 from Patent EP1572962.JD019005 - Sequence 29 from Patent EP1572962.JD030382 - Sequence 11406 from Patent EP1572962.JD030373 - Sequence 11397 from Patent EP1572962.JD536518 - Sequence 517542 from Patent EP1572962.JD365494 - Sequence 346518 from Patent EP1572962.JD433632 - Sequence 414656 from Patent EP1572962.JD312316 - Sequence 293340 from Patent EP1572962.JD331296 - Sequence 312320 from Patent EP1572962.JD194112 - Sequence 175136 from Patent EP1572962.JD449453 - Sequence 430477 from Patent EP1572962.JD511885 - Sequence 492909 from Patent EP1572962.JD440427 - Sequence 421451 from Patent EP1572962.DQ579581 - Homo sapiens piRNA piR-47693, complete sequence.JD368870 - Sequence 349894 from Patent EP1572962.JD554336 - Sequence 535360 from Patent EP1572962.JD401325 - Sequence 382349 from Patent EP1572962.JD418802 - Sequence 399826 from Patent EP1572962.JD261044 - Sequence 242068 from Patent EP1572962.JD304639 - Sequence 285663 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: A6NGC0, CH033_HUMAN, NM_023080, NP_075568, Q96BT8, Q9H7E9UCSC ID: uc003zfc.4RefSeq Accession: NM_023080
Protein: Q9H7E9
(aka CH033_HUMAN)
CCDS: CCDS34974.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_023080.2
exon count:
5 CDS single in 3' UTR:
no
RNA size:
2617
ORF size:
690 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
1580.00 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.