Description: Homo sapiens chromodomain helicase DNA binding protein 8 (CHD8), transcript variant 1, mRNA. RefSeq Summary (NM_001170629): This gene encodes a member of the chromodomain-helicase-DNA binding protein family, which is characterized by a SNF2-like domain and two chromatin organization modifier domains. The encoded protein also contains brahma and kismet domains, which are common to the subfamily of chromodomain-helicase-DNA binding proteins to which this protein belongs. This gene has been shown to function in several processes that include transcriptional regulation, epigenetic remodeling, promotion of cell proliferation, and regulation of RNA synthesis. Allelic variants of this gene are associated with autism spectrum disorder. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2016]. Transcript (Including UTRs) Position: hg19 chr14:21,853,353-21,899,867 Size: 46,515 Total Exon Count: 37 Strand: - Coding Region Position: hg19 chr14:21,853,772-21,899,802 Size: 46,031 Coding Exon Count: 37
ID:CHD8_HUMAN DESCRIPTION: RecName: Full=Chromodomain-helicase-DNA-binding protein 8; Short=CHD-8; EC=3.6.4.12; AltName: Full=ATP-dependent helicase CHD8; AltName: Full=Helicase with SNF2 domain 1; FUNCTION: DNA helicase that acts as a chromatin remodeling factor and regulates transcription. Acts as a transcription repressor by remodeling chromatin structure and recruiting histone H1 to target genes. Suppresses p53/TP53-mediated apoptosis by recruiting histone H1 and preventing p53/TP53 transactivation activity. Acts as a negative regulator of Wnt signaling pathway by regulating beta-catenin (CTNNB1) activity. Negatively regulates CTNNB1- targeted gene expression by being recruited specifically to the promoter regions of several CTNNB1 responsive genes. Involved in both enhancer blocking and epigenetic remodeling at chromatin boundary via its interaction with CTCF. Acts as a suppressor of STAT3 activity by suppressing the LIF-induced STAT3 transcriptional activity. Also acts as a transcription activator via its interaction with ZNF143 by participating in efficient U6 RNA polymerase III transcription. CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate. SUBUNIT: Interacts with p53/TP53, histone H1, CTNNB1, CTCF and PIAS3. Component of some MLL1/MLL complex, at least composed of the core components MLL, ASH2L, HCFC1/HCF1, WDR5 and RBBP5, as well as the facultative components C17orf49, CHD8, E2F6, HSP70, INO80C, KANSL1, LAS1L, MAX, MCRS1, MGA, KAT8/MOF, PELP1, PHF20, PRP31, RING2, RUVB1/TIP49A, RUVB2/TIP49B, SENP3, TAF1, TAF4, TAF6, TAF7, TAF9 and TEX10. Interacts with CHD7. INTERACTION: Q9P2D1:CHD7; NbExp=3; IntAct=EBI-4410319, EBI-3951683; SUBCELLULAR LOCATION: Nucleus. Note=Localizes to the promoter regions of several CTNNB1-responsive genes. Also present at known CTCF target sites. PTM: Sumoylated (By similarity). MISCELLANEOUS: Its gene is located in the 14q11.2 region of the genome which is associated with developmental delay, cognitive impairment and similar minor anomalies in some children, suggesting that it may be a good candidate for the phenotype. SIMILARITY: Belongs to the SNF2/RAD54 helicase family. CHD8 subfamily. SIMILARITY: Contains 2 chromo domains. SIMILARITY: Contains 1 helicase ATP-binding domain. SIMILARITY: Contains 1 helicase C-terminal domain.
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
ModBase Predicted Comparative 3D Structure on Q9HCK8
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
CR749315 - Homo sapiens mRNA; cDNA DKFZp686N17164 (from clone DKFZp686N17164). AB046784 - Homo sapiens mRNA for KIAA1564 protein, partial cds. BC156439 - Synthetic construct Homo sapiens clone IMAGE:100063036, MGC:190670 chromodomain helicase DNA binding protein 8 (CHD8) mRNA, encodes complete protein. AK122910 - Homo sapiens cDNA FLJ16585 fis, clone TESTI4000134, weakly similar to Chromodomain helicase-DNA-binding protein Mi-2. BC040636 - Homo sapiens, clone IMAGE:4153069, mRNA. AL834524 - Homo sapiens mRNA; cDNA DKFZp667O149 (from clone DKFZp667O149). BC036920 - Homo sapiens chromodomain helicase DNA binding protein 8, mRNA (cDNA clone IMAGE:5199722), partial cds. BC073903 - Homo sapiens chromodomain helicase DNA binding protein 8, mRNA (cDNA clone IMAGE:4415955), partial cds. AK131077 - Homo sapiens mRNA for FLJ00266 protein. JD225229 - Sequence 206253 from Patent EP1572962. JD147106 - Sequence 128130 from Patent EP1572962. JD427309 - Sequence 408333 from Patent EP1572962. JD368515 - Sequence 349539 from Patent EP1572962. JD301450 - Sequence 282474 from Patent EP1572962. BC011695 - Homo sapiens chromodomain helicase DNA binding protein 8, mRNA (cDNA clone IMAGE:3534143), partial cds. BC025964 - Homo sapiens chromodomain helicase DNA binding protein 8, mRNA (cDNA clone IMAGE:3534141), partial cds. BC063693 - Homo sapiens chromodomain helicase DNA binding protein 8, mRNA (cDNA clone IMAGE:4443191), partial cds. BC098452 - Homo sapiens chromodomain helicase DNA binding protein 8, mRNA (cDNA clone IMAGE:6302978), partial cds. JD481756 - Sequence 462780 from Patent EP1572962. JD481755 - Sequence 462779 from Patent EP1572962. JD479982 - Sequence 461006 from Patent EP1572962. AK056639 - Homo sapiens cDNA FLJ32077 fis, clone OCBBF1000188, weakly similar to Drosophila melanogaster KISMET-L long isoform (kis) mRNA. AK098408 - Homo sapiens cDNA FLJ25542 fis, clone JTH01318. AK122868 - Homo sapiens cDNA FLJ16499 fis, clone FCBBF3025650, moderately similar to Drosophila melanogaster KISMET-L long isoform (kis) mRNA. JD351174 - Sequence 332198 from Patent EP1572962. JD455737 - Sequence 436761 from Patent EP1572962. JD115719 - Sequence 96743 from Patent EP1572962. JD334314 - Sequence 315338 from Patent EP1572962. JD375429 - Sequence 356453 from Patent EP1572962.
Biochemical and Signaling Pathways
KEGG - Kyoto Encyclopedia of Genes and Genomes hsa04310 - Wnt signaling pathway
Reactome (by CSHL, EBI, and GO)
Protein Q9HCK8 (Reactome details) participates in the following event(s):
R-HSA-5368580 CHD8 binds beta-catenin to negatively regulate WNT-dependent gene expression R-HSA-3769402 Deactivation of the beta-catenin transactivating complex R-HSA-201681 TCF dependent signaling in response to WNT R-HSA-195721 Signaling by WNT R-HSA-162582 Signal Transduction
US Server
