Human Gene RLN2 (uc003zja.2)
  Description: Homo sapiens relaxin 2 (RLN2), transcript variant 1, mRNA.
RefSeq Summary (NM_134441): This gene encodes a member of the relaxin subfamily and insulin superfamily of peptide hormones. In humans there are three non-allelic relaxin genes. This gene encodes multiple protein isoforms, at least one of which undergoes proteolytic processing. This processing generates relaxin A and B chains that are linked by disulfide bonds to form the mature peptide hormone. This hormone plays a role in the male and female reproductive systems and was initially noted for its role in pregnancy. This protein also plays broader roles in the cardiovascular system, including in the regulation of blood pressure and control of heart rate, and data from animal models shows that this protein may have anti-fibrotic and cardioprotective effects. [provided by RefSeq, Jul 2016].
Transcript (Including UTRs)
   Position: hg19 chr9:5,299,866-5,304,611 Size: 4,746 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr9:5,300,098-5,304,580 Size: 4,483 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:5,299,866-5,304,611)mRNA (may differ from genome)Protein (185 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkHGNCHPRDLynxMalacardsMGI
neXtProtOMIMPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: REL2_HUMAN
DESCRIPTION: RecName: Full=Prorelaxin H2; Contains: RecName: Full=Relaxin B chain; Contains: RecName: Full=Relaxin A chain; Flags: Precursor;
FUNCTION: Relaxin is an ovarian hormone that acts with estrogen to produce dilatation of the birth canal in many mammals. May be involved in remodeling of connective tissues during pregnancy, promoting growth of pubic ligaments and ripening of the cervix.
SUBUNIT: Heterodimer of a B chain and an A chain linked by two disulfide bonds.
SUBCELLULAR LOCATION: Secreted.
TISSUE SPECIFICITY: Isoform 1 is expressed in the ovary during pregnancy. Also expressed in placenta, decidua and prostate. Isoform 2 is relatively abundant in placenta. It is in much lower abundance in the prostate gland. Not detected in the ovary.
SIMILARITY: Belongs to the insulin family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): RLN2
CDC HuGE Published Literature: RLN2
Positive Disease Associations: Fibrinogen
Related Studies:
  1. Fibrinogen
    Qiong Yang et al. BMC medical genetics 2007, Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study., BMC medical genetics. [PubMed 17903294]
    Using genome-wide association methodology, we have successfully identified a SNP in complete LD with a sequence variant previously shown to be strongly associated with factor VII, providing proof of principle for this approach. Further study of additional strongly associated SNPs and linked regions may identify novel variants that influence the inter-individual variability in hemostatic factors and hematological phenotypes.

-  MalaCards Disease Associations
  MalaCards Gene Search: RLN2
Diseases sorted by gene-association score: anterior cruciate ligament tears (8), bone cancer (2), bone squamous cell carcinoma (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.51 RPKM in Testis
Total median expression: 8.50 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -3.3031-0.106 Picture PostScript Text
3' UTR -54.80232-0.236 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016179 - Insulin-like
IPR022353 - Insulin_CS
IPR022352 - Insulin_family
IPR022421 - Relaxin

Pfam Domains:
PF00049 - Insulin/IGF/Relaxin family

SCOP Domains:
56994 - Insulin-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
6RLX - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P04090
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005179 hormone activity

Biological Process:
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007565 female pregnancy
GO:0010469 regulation of receptor activity
GO:0010628 positive regulation of gene expression
GO:0030819 positive regulation of cAMP biosynthetic process
GO:0045766 positive regulation of angiogenesis
GO:0050790 regulation of catalytic activity

Cellular Component:
GO:0005576 extracellular region


-  Descriptions from all associated GenBank mRNAs
  AF057706 - Homo sapiens relaxin H2 mRNA, 3' UTR.
JD549496 - Sequence 530520 from Patent EP1572962.
BC126419 - Homo sapiens relaxin 2, mRNA (cDNA clone MGC:161697 IMAGE:8992135), complete cds.
BC126415 - Homo sapiens relaxin 2, mRNA (cDNA clone MGC:161693 IMAGE:8992131), complete cds.
A06919 - H.sapiens mRNA for H2-relaxin.
A06925 - H.sapiens mRNA for H2-relaxin.
A17315 - H.sapiens mRNA for H2-preprorelaxin.
E00219 - cDNA encoding human H2-prepro relaxin.
X00948 - Human mRNA for prepro-relaxin H2.
HQ258745 - Synthetic construct Homo sapiens clone IMAGE:100072775 relaxin 2 (RLN2) gene, encodes complete protein.
KJ892009 - Synthetic construct Homo sapiens clone ccsbBroadEn_01403 RLN2 gene, encodes complete protein.
JD092704 - Sequence 73728 from Patent EP1572962.
JD458215 - Sequence 439239 from Patent EP1572962.
JD103302 - Sequence 84326 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P04090 (Reactome details) participates in the following event(s):

R-HSA-444838 Relaxin receptor 1 binds relaxin 2 and 3
R-HSA-444879 Relaxin receptor 2 binds relaxin 2 and INSL3
R-HSA-744886 The Ligand:GPCR:Gs complex dissociates
R-HSA-744887 Liganded Gs-activating GPCRs bind inactive heterotrimeric Gs
R-HSA-379044 Liganded Gs-activating GPCR acts as a GEF for Gs
R-HSA-444821 Relaxin receptors
R-HSA-418555 G alpha (s) signalling events
R-HSA-375276 Peptide ligand-binding receptors
R-HSA-388396 GPCR downstream signalling
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-372790 Signaling by GPCR
R-HSA-500792 GPCR ligand binding
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A0AVM0, NM_134441, NP_604390, P04090, Q99936, Q9UCX3, Q9UQJ2, REL2_HUMAN, uc003zja.1
UCSC ID: uc003zja.2
RefSeq Accession: NM_134441
Protein: P04090 (aka REL2_HUMAN)
CCDS: CCDS6460.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_134441.2
exon count: 2CDS single in 3' UTR: no RNA size: 829
ORF size: 558CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 969.00frame shift in genome: no % Coverage: 99.03
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.