The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse
Rat
Zebrafish
D. melanogaster
C. elegans
S. cerevisiae
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
Descriptions from all associated GenBank mRNAs
KM004963 - Homo sapiens clone 939 T cell receptor alpha mRNA, partial cds. AB977134 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: N(3)-TRA62. AB977435 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA169. AB977211 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: EEM(3)-TRA129. AB749882 - Homo sapiens mRNA for T-cell receptor alpha chain, partial cds, clone: Q_65_alpha. AB976735 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: N(1)-TRA44. AB977042 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: EEM(2)-TRA303. AB977326 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA59. AB977452 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA186. AB977231 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: LEM(3)-TRA89. AB977315 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA48. AB306054 - Homo sapiens mRNA for T cell receptor alpha variable 20, partial cds, clone: un 136. AB306108 - Homo sapiens mRNA for T cell receptor alpha variable 20, partial cds, clone: un 255-1. AB977019 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: CM(2)-TRA131. BC025727 - Homo sapiens T cell receptor alpha variable 20, mRNA (cDNA clone IMAGE:5201547). AB976729 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: N(1)-TRA27. CU693042 - Synthetic construct Homo sapiens gateway clone IMAGE:100020664 5' read TRAV20 mRNA. KJ904731 - Synthetic construct Homo sapiens clone ccsbBroadEn_14125 TRAV20 gene, encodes complete protein. M97712 - Human T-cell receptor (J alpha D-variant, C alpha 1) mRNA. AY513882 - Homo sapiens T-cell receptor alpha mRNA, partial cds. KX076946 - Homo sapiens isolate SG_Subject10 clone 1173-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075267 - Homo sapiens isolate PB_Subject9 clone 1046-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075327 - Homo sapiens isolate PB_Subject9 clone 1106-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076566 - Homo sapiens isolate SG_Subject3 clone 793-3 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075920 - Homo sapiens isolate SG_Subject2 clone 147-2 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX074441 - Homo sapiens isolate PB_Subject2 clone 220-2 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX074677 - Homo sapiens isolate PB_Subject4 clone 456-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX074979 - Homo sapiens isolate PB_Subject3 clone 758-3 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX074734 - Homo sapiens isolate PB_Subject4 clone 513-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075258 - Homo sapiens isolate PB_Subject9 clone 1037-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075722 - Homo sapiens isolate PB_Subject8 clone 1501-8 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX074325 - Homo sapiens isolate PB_Subject1 clone 104-1 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075275 - Homo sapiens isolate PB_Subject9 clone 1054-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX077149 - Homo sapiens isolate SG_Subject8 clone 1376-8 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075049 - Homo sapiens isolate PB_Subject3 clone 828-3 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076957 - Homo sapiens isolate SG_Subject10 clone 1184-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076866 - Homo sapiens isolate SG_Subject10 clone 1093-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. M87865 - Homo sapiens T-cell receptor alpha (TRA@) mRNA, partial cds. KX075115 - Homo sapiens isolate PB_Subject3 clone 894-3 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075125 - Homo sapiens isolate PB_Subject3 clone 904-3 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. AF020655 - Homo sapiens T cell receptor alpha chain variable region (AV30S1) mRNA, partial cds. M87867 - Human T-cell antigen receptor alpha (TCRA) mRNA, partial cds. KX075117 - Homo sapiens isolate PB_Subject3 clone 896-3 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075186 - Homo sapiens isolate PB_Subject6 clone 965-6 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX077127 - Homo sapiens isolate SG_Subject8 clone 1354-8 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075501 - Homo sapiens isolate PB_Subject10 clone 1280-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX074227 - Homo sapiens isolate PB_Subject1 clone 6-1 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076202 - Homo sapiens isolate SG_Subject4 clone 429-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076336 - Homo sapiens isolate SG_Subject5 clone 563-5 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075400 - Homo sapiens isolate PB_Subject9 clone 1179-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076205 - Homo sapiens isolate SG_Subject4 clone 432-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX077015 - Homo sapiens isolate SG_Subject10 clone 1242-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076666 - Homo sapiens isolate SG_Subject9 clone 893-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076776 - Homo sapiens isolate SG_Subject9 clone 1003-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. AB976995 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: CM(2)-TRA29. KX074641 - Homo sapiens isolate PB_Subject4 clone 420-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. AB977327 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA60. MG789042 - Homo sapiens isolate Sample1_Cell23_11C1_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG789063 - Homo sapiens isolate Sample1_Cell31_11C9_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG789120 - Homo sapiens isolate Sample1_Cell56_11E10_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG789170 - Homo sapiens isolate Sample1_Cell78_11H2_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG789263 - Homo sapiens isolate Sample1_Cell118_12C9_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG789269 - Homo sapiens isolate Sample1_Cell121_12C12_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG789309 - Homo sapiens isolate Sample1_Cell139_12E6_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG789418 - Homo sapiens isolate Sample1_Cell188_13E2_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG789471 - Homo sapiens isolate Sample1_Cell215_14G3_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG789627 - Homo sapiens isolate Sample1_Cell281_18E6_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG789670 - Homo sapiens isolate Sample1_Cell300_19E11_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG789681 - Homo sapiens isolate Sample1_Cell304_19H9_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG789875 - Homo sapiens isolate Sample2_Cell64_1F5_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG789953 - Homo sapiens isolate Sample2_Cell97_2A6_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG790037 - Homo sapiens isolate Sample2_Cell139_2D12_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG790097 - Homo sapiens isolate Sample2_Cell164_2G3_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG790122 - Homo sapiens isolate Sample2_Cell175_2H3_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG790158 - Homo sapiens isolate Sample2_Cell192_3C10_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG790301 - Homo sapiens isolate Sample3_Cell9_1A9_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG790315 - Homo sapiens isolate Sample3_Cell15_1B3_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG790408 - Homo sapiens isolate Sample3_Cell58_1E11_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG790455 - Homo sapiens isolate Sample3_Cell79_1G10_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG790524 - Homo sapiens isolate Sample3_Cell109_2B6_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG790544 - Homo sapiens isolate Sample3_Cell119_2C4_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG790647 - Homo sapiens isolate Sample3_Cell165_2G5_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG790955 - Homo sapiens isolate Sample3_Cell299_9E2_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG791049 - Homo sapiens isolate AA_Cell21_3B9_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG791230 - Homo sapiens isolate AA_Cell100_4A9_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG791377 - Homo sapiens isolate AA_Cell173_4H2_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG791389 - Homo sapiens isolate AA_Cell179_4H8_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG791532 - Homo sapiens isolate AA_Cell243_5F4_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG791674 - Homo sapiens isolate AA_Cell311_6D5_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG791706 - Homo sapiens isolate AA_Cell325_6E8_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG791731 - Homo sapiens isolate AA_Cell337_6F9_CDR3a T-cell receptor alpha chain mRNA, partial sequence. KM004047 - Homo sapiens clone 22 T cell receptor beta mRNA, partial cds. KM004051 - Homo sapiens clone 26 T cell receptor beta mRNA, partial cds. KM004266 - Homo sapiens clone 241 T cell receptor beta mRNA, partial cds. KM004337 - Homo sapiens clone 312 T cell receptor alpha mRNA, partial cds. KM004342 - Homo sapiens clone 317 T cell receptor alpha mRNA, partial cds. KM004446 - Homo sapiens clone 421 T cell receptor alpha mRNA, partial cds. KM004491 - Homo sapiens clone 466 T cell receptor alpha mRNA, partial cds. KM004861 - Homo sapiens clone 837 T cell receptor alpha mRNA, partial cds. KM004880 - Homo sapiens clone 856 T cell receptor alpha mRNA, partial cds. KM004889 - Homo sapiens clone 865 T cell receptor alpha mRNA, partial cds. KM004922 - Homo sapiens clone 898 T cell receptor alpha mRNA, partial cds. KM004926 - Homo sapiens clone 902 T cell receptor alpha mRNA, partial cds. KM004938 - Homo sapiens clone 914 T cell receptor alpha mRNA, partial cds. KM004942 - Homo sapiens clone 918 T cell receptor alpha mRNA, partial cds. KM004996 - Homo sapiens clone 972 T cell receptor alpha mRNA, partial cds. X70305 - H.sapiens mRNA for TCR V-alpha w30. X68696 - H.sapiens mRNA for T-cell receptor alpha chain, V-alpha 30 segment. D16586 - Homo sapiens mRNA for T cell receptor alpha chain, N-terminal. S60789 - Homo sapiens T-cell receptor alpha chain variable region (TCRAV28) mRNA, partial cds. KX076432 - Homo sapiens isolate SG_Subject3 clone 659-3 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. S61982 - TcR alpha =T-cell receptor alpha chain V region {clone 2A2} [human, peripheral blood T cells, mRNA Partial, 81 nt]. S57444 - T-cell-receptor V alpha 28.1 [human, mRNA Partial, 63 nt].
US Server
