Human Gene NME6 (uc003cso.3)
  Description: Homo sapiens NME/NM23 nucleoside diphosphate kinase 6 (NME6), mRNA.
RefSeq Summary (NM_005793): Nucleoside diphosphate (NDP) kinases (EC 2.7.4.6), such as NME6, are ubiquitous enzymes that catalyze transfer of gamma-phosphates, via a phosphohistidine intermediate, between nucleoside and dioxynucleoside tri- and diphosphates (Mehus et al., 1999 [PubMed 10453732]).[supplied by OMIM, Jul 2010].
Transcript (Including UTRs)
   Position: hg19 chr3:48,335,589-48,342,848 Size: 7,260 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr3:48,336,127-48,342,802 Size: 6,676 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:48,335,589-48,342,848)mRNA (may differ from genome)Protein (194 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMGI
neXtProtOMIMPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: NDK6_HUMAN
DESCRIPTION: RecName: Full=Nucleoside diphosphate kinase 6; Short=NDK 6; Short=NDP kinase 6; EC=2.7.4.6; AltName: Full=Inhibitor of p53-induced apoptosis-alpha; Short=IPIA-alpha; AltName: Full=nm23-H6;
FUNCTION: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Inhibitor of p53-induced apoptosis.
CATALYTIC ACTIVITY: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate.
COFACTOR: Magnesium (By similarity).
TISSUE SPECIFICITY: Expressed at a moderately low level in many tissues. Most abundant in kidney, prostate, ovary, intestine, and spleen.
SIMILARITY: Belongs to the NDK family.
SEQUENCE CAUTION: Sequence=AAC69439.1; Type=Erroneous initiation; Sequence=AAH01808.1; Type=Erroneous initiation; Sequence=AAH12828.1; Type=Erroneous initiation; Sequence=BAD96275.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): NME6
CDC HuGE Published Literature: NME6

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.74 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 160.40 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -15.2046-0.330 Picture PostScript Text
3' UTR -205.62538-0.382 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001564 - Nucleoside_diP_kinase
IPR023005 - Nucleoside_diP_kinase_AS

Pfam Domains:
PF00334 - Nucleoside diphosphate kinase

SCOP Domains:
54919 - Nucleoside diphosphate kinases

ModBase Predicted Comparative 3D Structure on O75414
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004550 nucleoside diphosphate kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006165 nucleoside diphosphate phosphorylation
GO:0006183 GTP biosynthetic process
GO:0006228 UTP biosynthetic process
GO:0006241 CTP biosynthetic process
GO:0006915 apoptotic process
GO:0009117 nucleotide metabolic process
GO:0015949 nucleobase-containing small molecule interconversion
GO:0016310 phosphorylation
GO:0030308 negative regulation of cell growth
GO:0045839 negative regulation of mitotic nuclear division

Cellular Component:
GO:0005739 mitochondrion
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AF051941 - Homo sapiens type 6 nucleoside diphosphate kinase NM23-H6 (NM23-H6) mRNA, complete cds.
BC001808 - Homo sapiens non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase), mRNA (cDNA clone MGC:1889 IMAGE:2966629), complete cds.
BC012828 - Homo sapiens non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase), mRNA (cDNA clone MGC:4514 IMAGE:2966629), complete cds.
AK308970 - Homo sapiens cDNA, FLJ99011.
AK222555 - Homo sapiens mRNA for nucleoside diphosphate kinase type 6 variant, clone: CAE02417.
AK297364 - Homo sapiens cDNA FLJ50578 complete cds, moderately similar to Nucleoside diphosphate kinase 6 (EC 2.7.4.6).
AK294809 - Homo sapiens cDNA FLJ50505 complete cds, moderately similar to Nucleoside diphosphate kinase 6 (EC 2.7.4.6).
U90449 - Human inhibitor of p53-induced apoptosis-alpha (IPIA-alpha) mRNA, complete cds.
JD329276 - Sequence 310300 from Patent EP1572962.
JD168797 - Sequence 149821 from Patent EP1572962.
KJ892956 - Synthetic construct Homo sapiens clone ccsbBroadEn_02350 NME6 gene, encodes complete protein.
KJ905388 - Synthetic construct Homo sapiens clone ccsbBroadEn_14957 NME6 gene, encodes complete protein.
DQ892283 - Synthetic construct clone IMAGE:100004913; FLH184842.01X; RZPDo839C06146D non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase) (NME6) gene, encodes complete protein.
DQ895483 - Synthetic construct Homo sapiens clone IMAGE:100009943; FLH184838.01L; RZPDo839C06145D non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase) (NME6) gene, encodes complete protein.
AK311152 - Homo sapiens cDNA, FLJ18194.
AK307332 - Homo sapiens cDNA, FLJ97280.
AK309090 - Homo sapiens cDNA, FLJ99131.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00230 - Purine metabolism
hsa00240 - Pyrimidine metabolism
hsa01100 - Metabolic pathways

BioCyc Knowledge Library
PWY-5687 - pyrimidine ribonucleotides interconversion
PWY-6126 - adenosine nucleotides de novo biosynthesis
PWY0-162 - pyrimidine ribonucleotides de novo biosynthesis
PWY0-163 - salvage pathways of pyrimidine ribonucleotides
PWY0-166 - pyrimidine deoxyribonucleotides de novo biosynthesis I

Reactome (by CSHL, EBI, and GO)

Protein O75414 (Reactome details) participates in the following event(s):

R-HSA-6806877 NMEs phosphorylate NDPs to NTPs
R-HSA-499943 Interconversion of nucleotide di- and triphosphates
R-HSA-15869 Metabolism of nucleotides
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: B4DGW7, B4DM99, NDK6_HUMAN, NM_005793, NP_005784, O75414, Q53HM5, Q96E73, Q9BQ63
UCSC ID: uc003cso.3
RefSeq Accession: NM_005793
Protein: O75414 (aka NDK6_HUMAN)
CCDS: CCDS2763.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_005793.3
exon count: 6CDS single in 3' UTR: no RNA size: 1189
ORF size: 585CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1207.00frame shift in genome: no % Coverage: 98.32
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.