Human Gene WDR24 (uc002ciz.1)
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Sequence and Links to Tools and Databases
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Primer design for this transcript
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Comparative Toxicogenomics Database (CTD)
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The following chemicals interact with this gene
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Common Gene Haplotype Alleles
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Press "+" in the title bar above to open this section.
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
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The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
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Protein Domain and Structure Information
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Pfam Domains: PF00400 - WD domain, G-beta repeat
SCOP Domains: 50952 - Soluble quinoprotein glucose dehydrogenase
50960 - TolB, C-terminal domain
63825 - YWTD domain
63829 - Calcium-dependent phosphotriesterase
69304 - Tricorn protease N-terminal domain
101898 - NHL repeat
50965 - Galactose oxidase, central domain
75011 - 3-carboxy-cis,cis-mucoante lactonizing enzyme
101908 - Putative isomerase YbhE
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase
50974 - Nitrous oxide reductase, N-terminal domain
50978 - WD40 repeat-like
50993 - Prolyl oligopeptidase, N-terminal domain
69322 - Tricorn protease domain 2
50998 - Quinoprotein alcohol dehydrogenase-like
51004 - C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
82171 - Dipeptidyl peptidase IV/CD26, N-terminal domain
ModBase Predicted Comparative 3D Structure on Q96S15-2
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
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Descriptions from all associated GenBank mRNAs
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BC009761 - Homo sapiens WD repeat domain 24, mRNA (cDNA clone IMAGE:3938571), partial cds. BC008025 - Homo sapiens WD repeat domain 24, mRNA (cDNA clone MGC:15992 IMAGE:3544791), complete cds. AK301146 - Homo sapiens cDNA FLJ60907 complete cds, highly similar to WD repeat protein 24. AL136863 - Homo sapiens mRNA; cDNA DKFZp434F054 (from clone DKFZp434F054). JD240917 - Sequence 221941 from Patent EP1572962. AM393299 - Synthetic construct Homo sapiens clone IMAGE:100001883 for hypothetical protein (WDR24 gene). DQ577998 - Homo sapiens piRNA piR-46110, complete sequence. JD027562 - Sequence 8586 from Patent EP1572962. JD028188 - Sequence 9212 from Patent EP1572962. JD392449 - Sequence 373473 from Patent EP1572962. JD247513 - Sequence 228537 from Patent EP1572962. JD254581 - Sequence 235605 from Patent EP1572962. JD413705 - Sequence 394729 from Patent EP1572962. JD388755 - Sequence 369779 from Patent EP1572962. JD059491 - Sequence 40515 from Patent EP1572962. JD109584 - Sequence 90608 from Patent EP1572962. JD380674 - Sequence 361698 from Patent EP1572962. JD099178 - Sequence 80202 from Patent EP1572962. JD131489 - Sequence 112513 from Patent EP1572962. JD310676 - Sequence 291700 from Patent EP1572962. JD109336 - Sequence 90360 from Patent EP1572962. JD428086 - Sequence 409110 from Patent EP1572962. JD153551 - Sequence 134575 from Patent EP1572962. JD396020 - Sequence 377044 from Patent EP1572962. JD461619 - Sequence 442643 from Patent EP1572962. JD372454 - Sequence 353478 from Patent EP1572962. JD124925 - Sequence 105949 from Patent EP1572962. JD440637 - Sequence 421661 from Patent EP1572962.
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Other Names for This Gene
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Alternate Gene Symbols: C16orf21, JFP7, NM_032259, NP_115635, Q96S15-2 UCSC ID: uc002ciz.1 RefSeq Accession: NM_032259
Protein: Q96S15-2, splice isoform of Q96S15
CCDS: CCDS10420.1
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Gene Model Information
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category:
| coding
| nonsense-mediated-decay:
| no
| RNA accession:
| NM_032259.2
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exon count:
| 9 | CDS single in 3' UTR:
| no
| RNA size:
| 3165 |
ORF size:
| 2373 | CDS single in intron:
| no
| Alignment % ID:
| 99.97 |
txCdsPredict score:
| 4788.00 | frame shift in genome:
| no
| % Coverage:
| 100.00 |
has start codon:
| yes
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| yes
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 0 | # strange splices:
| 0 |
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Click here
for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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