Human Gene DLGAP5 (uc001xbs.3)
  Description: Homo sapiens discs, large (Drosophila) homolog-associated protein 5 (DLGAP5), transcript variant 1, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr14:55,614,834-55,658,396 Size: 43,563 Total Exon Count: 19 Strand: -
Coding Region
   Position: hg19 chr14:55,615,069-55,655,897 Size: 40,829 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:55,614,834-55,658,396)mRNA (may differ from genome)Protein (846 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DLGP5_HUMAN
DESCRIPTION: RecName: Full=Disks large-associated protein 5; Short=DAP-5; AltName: Full=Discs large homolog 7; AltName: Full=Disks large-associated protein DLG7; AltName: Full=Hepatoma up-regulated protein; Short=HURP;
FUNCTION: Potential cell cycle regulator that may play a role in carcinogenesis of cancer cells. Mitotic phosphoprotein regulated by the ubiquitin-proteasome pathway. Key regulator of adherens junction integrity and differentiation that may be involved in CDH1-mediated adhesion and signaling in epithelial cells.
SUBUNIT: Interacts with CDK1. Interacts with the C-terminal proline-rich region of FBXO7. Recruited by FBXO7 to a SCF (SKP1- CUL1-F-box) protein complex in a CDK1/Cyclin B-phosphorylation dependent manner. Interacts with CDH1.
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Cytoplasm, cytoskeleton, spindle. Note=Localizes to the spindle in mitotic cells. Colocalizes with CDH1 at sites of cell-cell contact in intestinal epithelial cells.
TISSUE SPECIFICITY: Abundantly expressed in fetal liver. Expressed at lower levels in bone marrow, testis, colon, and placenta.
DEVELOPMENTAL STAGE: Elevated levels of expression detected in the G2/M phase of synchronized cultures of HeLa cells.
PTM: Ubiquitinated, leading to its degradation.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR. Decreased phosphorylation levels are associated with the differentiation of intestinal epithelial cells.
SIMILARITY: Belongs to the SAPAP family.
CAUTION: It was localized to the spindle and the spindle pole (PubMed:12527899) but was later found to be localized to the spindle and to be excluded from the spindle pole (PubMed:15561729).
SEQUENCE CAUTION: Sequence=BAA02797.3; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DLGAP5
Diseases sorted by gene-association score: hepatocellular carcinoma (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 26.45 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 50.43 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -74.10217-0.341 Picture PostScript Text
3' UTR -49.50235-0.211 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005026 - GKAP

Pfam Domains:
PF03359 - Guanylate-kinase-associated protein (GKAP) protein

ModBase Predicted Comparative 3D Structure on Q15398
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserGenome BrowserNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsemblFlyBase  
 Protein SequenceProtein SequenceProtein Sequence  
 AlignmentAlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004721 phosphoprotein phosphatase activity
GO:0005515 protein binding

Biological Process:
GO:0006470 protein dephosphorylation
GO:0007049 cell cycle
GO:0007079 mitotic chromosome movement towards spindle pole
GO:0007221 positive regulation of transcription of Notch receptor target
GO:0008283 cell proliferation
GO:0023052 signaling
GO:0045842 positive regulation of mitotic metaphase/anaphase transition

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005815 microtubule organizing center
GO:0005819 spindle
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0031616 spindle pole centrosome


-  Descriptions from all associated GenBank mRNAs
  AK297480 - Homo sapiens cDNA FLJ55894 complete cds, highly similar to Discs large homolog 7.
AK291847 - Homo sapiens cDNA FLJ78771 complete cds, highly similar to Homo sapiens discs, large homolog 7 (Drosophila), mRNA.
D13633 - Homo sapiens KIAA0008 mRNA.
BC010658 - Homo sapiens discs, large (Drosophila) homolog-associated protein 5, mRNA (cDNA clone MGC:8752 IMAGE:3873367), complete cds.
AB076695 - Homo sapiens mRNA for hepatoma up-regulated protein, complete cds.
FW339981 - Screening.
BC016276 - Homo sapiens discs, large (Drosophila) homolog-associated protein 5, mRNA (cDNA clone MGC:768 IMAGE:3537754), complete cds.
AK299338 - Homo sapiens cDNA FLJ60069 complete cds, highly similar to Discs large homolog 7.
BX248255 - human full-length cDNA clone CS0DH002YN05 of T cells (Jurkat cell line) of Homo sapiens (human).
JF432307 - Synthetic construct Homo sapiens clone IMAGE:100073489 discs, large (Drosophila) homolog-associated protein 5 (DLG7) gene, encodes complete protein.
KJ892849 - Synthetic construct Homo sapiens clone ccsbBroadEn_02243 DLGAP5 gene, encodes complete protein.
BT007344 - Homo sapiens discs, large homolog 7 (Drosophila) mRNA, complete cds.
KJ906010 - Synthetic construct Homo sapiens clone ccsbBroadEn_15680 DLGAP5 gene, encodes complete protein.
AB463013 - Synthetic construct DNA, clone: pF1KA0008, Homo sapiens DLG7 gene for discs, large homolog 7, without stop codon, in Flexi system.
CU677589 - Synthetic construct Homo sapiens gateway clone IMAGE:100020483 5' read DLG7 mRNA.
CU679787 - Synthetic construct Homo sapiens gateway clone IMAGE:100020475 5' read DLG7 mRNA.
JD218932 - Sequence 199956 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q15398 (Reactome details) participates in the following event(s):

R-HSA-9013508 NOTCH3 Intracellular Domain Regulates Transcription
R-HSA-9012852 Signaling by NOTCH3
R-HSA-157118 Signaling by NOTCH
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: DLG7, DLGP5_HUMAN, KIAA0008, NM_014750, NP_055565, Q15398, Q8NG58
UCSC ID: uc001xbs.3
RefSeq Accession: NM_014750
Protein: Q15398 (aka DLGP5_HUMAN)
CCDS: CCDS53897.1, CCDS9723.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_014750.4
exon count: 19CDS single in 3' UTR: no RNA size: 2993
ORF size: 2541CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 5215.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.