Human Gene ZFAND6 (uc002bff.2)
  Description: Homo sapiens zinc finger, AN1-type domain 6 (ZFAND6), transcript variant 2, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr15:80,351,910-80,430,735 Size: 78,826 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr15:80,412,687-80,429,970 Size: 17,284 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:80,351,910-80,430,735)mRNA (may differ from genome)Protein (208 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
H-INVHGNCHPRDLynxMGIneXtProt
OMIMPubMedReactomeTreefamUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ZFAN6_HUMAN
DESCRIPTION: RecName: Full=AN1-type zinc finger protein 6; AltName: Full=Associated with PRK1 protein; AltName: Full=Zinc finger A20 domain-containing protein 3;
FUNCTION: Involved in regulation of TNF-alpha induced NF-kappa-B activation and apoptosis. Involved in modulation of 'Lys-48'- linked polyubiquitination status of TRAF2 and decreases association of TRAF2 with RIPK1. Required for PTS1 target sequence-dependent protein import into peroxisomes and PEX5 stability; may cooperate with PEX6. In vitro involved in PEX5 export from the cytosol to peroxisomes (By similarity).
SUBUNIT: Interacts with PKN1 (By similarity). Interacts with TRAF2. Interacts with mono- and polyubiquitin. Interacts with PEX6. Interacts with PEX5 (Cys-linked ubiquitinated) (By similarity).
INTERACTION: Q12933:TRAF2; NbExp=6; IntAct=EBI-724630, EBI-355744;
SUBCELLULAR LOCATION: Cytoplasm (By similarity).
TISSUE SPECIFICITY: Widely expressed with high level in heart, skeletal muscle, liver, kidney and placenta.
DOMAIN: The A20-type zinc finger domain mediates regulation of NF- kappa-B activity.
DOMAIN: The AN1-type zinc finger domain mediates association with TRAF2.
SIMILARITY: Contains 1 A20-type zinc finger.
SIMILARITY: Contains 1 AN1-type zinc finger.
SEQUENCE CAUTION: Sequence=AAD17528.1; Type=Frameshift; Positions=141;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): ZFAND6
CDC HuGE Published Literature: ZFAND6
Positive Disease Associations: Diabetes Mellitus, Type 2
Related Studies:
  1. Diabetes Mellitus, Type 2
    Benjamin F Voight et al. Nature genetics 2010, Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis., Nature genetics. [PubMed 20581827]

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 49.70 RPKM in Testis
Total median expression: 934.31 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -116.50259-0.450 Picture PostScript Text
3' UTR -186.82765-0.244 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002653 - Znf_A20
IPR000058 - Znf_AN1

Pfam Domains:
PF01428 - AN1-like Zinc finger
PF01754 - A20-like zinc finger

ModBase Predicted Comparative 3D Structure on Q6FIF0
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003674 molecular_function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0031593 polyubiquitin binding
GO:0046872 metal ion binding

Biological Process:
GO:0006625 protein targeting to peroxisome
GO:0006915 apoptotic process
GO:0015031 protein transport
GO:0043066 negative regulation of apoptotic process
GO:0043122 regulation of I-kappaB kinase/NF-kappaB signaling
GO:0071356 cellular response to tumor necrosis factor

Cellular Component:
GO:0005575 cellular_component
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  LF384288 - JP 2014500723-A/191791: Polycomb-Associated Non-Coding RNAs.
AF061739 - Homo sapiens unknown mRNA.
BC005283 - Homo sapiens zinc finger, AN1-type domain 6, mRNA (cDNA clone MGC:12336 IMAGE:4042180), complete cds.
AK312646 - Homo sapiens cDNA, FLJ93032, highly similar to Homo sapiens zinc finger, A20 domain containing 3 (ZA20D3), mRNA.
AL136598 - Homo sapiens mRNA; cDNA DKFZp564F2116 (from clone DKFZp564F2116).
AF261138 - Homo sapiens HT032 mRNA, complete cds.
AJ251095 - Homo sapiens mRNA for PRK1-associated protein AWP1 (AWP1 gene).
EU446810 - Synthetic construct Homo sapiens clone IMAGE:100070158; IMAGE:100012019; FLH257493.01L zinc finger, AN1-type domain 6 (ZFAND6) gene, encodes complete protein.
CU675081 - Synthetic construct Homo sapiens gateway clone IMAGE:100016768 5' read ZFAND6 mRNA.
EU832368 - Synthetic construct Homo sapiens clone HAIB:100067397; DKFZo004A1028 zinc finger, AN1-type domain 6 protein (ZFAND6) gene, encodes complete protein.
KJ894024 - Synthetic construct Homo sapiens clone ccsbBroadEn_03418 ZFAND6 gene, encodes complete protein.
EU832283 - Synthetic construct Homo sapiens clone HAIB:100067312; DKFZo008A1027 zinc finger, AN1-type domain 6 protein (ZFAND6) gene, encodes complete protein.
CR533476 - Homo sapiens full open reading frame cDNA clone RZPDo834A0817D for gene AWP1, protein associated with PRK1; complete cds, incl. stopcodon.
LF368627 - JP 2014500723-A/176130: Polycomb-Associated Non-Coding RNAs.
LF368626 - JP 2014500723-A/176129: Polycomb-Associated Non-Coding RNAs.
AK055881 - Homo sapiens cDNA FLJ31319 fis, clone LIVER1000482, moderately similar to PRK1-associated protein AWP1.
LF368619 - JP 2014500723-A/176122: Polycomb-Associated Non-Coding RNAs.
JD419047 - Sequence 400071 from Patent EP1572962.
JD297520 - Sequence 278544 from Patent EP1572962.
JD315739 - Sequence 296763 from Patent EP1572962.
JD407861 - Sequence 388885 from Patent EP1572962.
JD300648 - Sequence 281672 from Patent EP1572962.
LF368617 - JP 2014500723-A/176120: Polycomb-Associated Non-Coding RNAs.
JD549071 - Sequence 530095 from Patent EP1572962.
JD553384 - Sequence 534408 from Patent EP1572962.
JD553383 - Sequence 534407 from Patent EP1572962.
LF368616 - JP 2014500723-A/176119: Polycomb-Associated Non-Coding RNAs.
MA619865 - JP 2018138019-A/191791: Polycomb-Associated Non-Coding RNAs.
MA604204 - JP 2018138019-A/176130: Polycomb-Associated Non-Coding RNAs.
MA604203 - JP 2018138019-A/176129: Polycomb-Associated Non-Coding RNAs.
MA604196 - JP 2018138019-A/176122: Polycomb-Associated Non-Coding RNAs.
MA604194 - JP 2018138019-A/176120: Polycomb-Associated Non-Coding RNAs.
MA604193 - JP 2018138019-A/176119: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q6FIF0 (Reactome details) participates in the following event(s):

R-HSA-9033516 Ub:PEX5L (in PEX2:PEX10:PEX12:Ub:PEX5L:PEX7:PEX13:PEX14) binds PEX1:PEX6:PEX26 and ZFAND6
R-HSA-9033533 Ub:PEX5S,L (in PEX2:PEX10:PEX12:Ub:PEX5S:PEX13:PEX14) binds PEX1:PEX6:PEX26 and ZFAND6
R-HSA-9033241 Peroxisomal protein import
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: AWP1, D3DW92, D3DW94, HT032, NM_001242911, NP_061879, O95792, Q6FIF0, Q9BQF7, Q9GZY3, ZA20D3, ZFAN6_HUMAN
UCSC ID: uc002bff.2
RefSeq Accession: NM_001242911
Protein: Q6FIF0 (aka ZFAN6_HUMAN)
CCDS: CCDS10313.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001242911.1
exon count: 6CDS single in 3' UTR: no RNA size: 1664
ORF size: 627CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1454.00frame shift in genome: no % Coverage: 99.22
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.