Human Gene USP45 (uc003ppx.2)
  Description: Homo sapiens ubiquitin specific peptidase 45 (USP45), mRNA.
RefSeq Summary (NM_001080481): The protein encoded by this gene is a deubiquitylase that binds ERCC1, the catalytic subunit of the XPF-ERCC1 DNA repair endonuclease. This endonuclease is a critical regulator of DNA repair processes, and the deubiquitylase activity of the encoded protein is important for maintaining the DNA repair ability of XPF-ERCC1. [provided by RefSeq, Sep 2016].
Transcript (Including UTRs)
   Position: hg19 chr6:99,880,184-99,963,252 Size: 83,069 Total Exon Count: 18 Strand: -
Coding Region
   Position: hg19 chr6:99,883,592-99,958,096 Size: 74,505 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:99,880,184-99,963,252)mRNA (may differ from genome)Protein (814 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCLynxMGIneXtProt
OMIMPubMedReactomeTreefamUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: UBP45_HUMAN
DESCRIPTION: RecName: Full=Ubiquitin carboxyl-terminal hydrolase 45; EC=3.4.19.12; AltName: Full=Deubiquitinating enzyme 45; AltName: Full=Ubiquitin thioesterase 45; AltName: Full=Ubiquitin-specific-processing protease 45;
CATALYTIC ACTIVITY: Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C- terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).
TISSUE SPECIFICITY: Broadly expressed, with highest levels in ovary, skeletal muscle and spleen.
SIMILARITY: Belongs to the peptidase C19 family.
SIMILARITY: Contains 1 UBP-type zinc finger.
SEQUENCE CAUTION: Sequence=CAI17192.1; Type=Erroneous gene model prediction; Sequence=CAI19761.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): USP45
CDC HuGE Published Literature: USP45
Positive Disease Associations: Glucose , Tunica Media
Related Studies:
  1. Glucose
    , , . [PubMed 0]
  2. Tunica Media
    , , . [PubMed 0]

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.91 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 100.35 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -234.02533-0.439 Picture PostScript Text
3' UTR -812.933408-0.239 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018200 - Pept_C19ubi-hydrolase_C_CS
IPR001394 - Peptidase_C19
IPR013083 - Znf_RING/FYVE/PHD
IPR001607 - Znf_UBP

Pfam Domains:
PF00443 - Ubiquitin carboxyl-terminal hydrolase
PF02148 - Zn-finger in ubiquitin-hydrolases and other protein
PF13423 - Ubiquitin carboxyl-terminal hydrolase

SCOP Domains:
54001 - Cysteine proteinases

ModBase Predicted Comparative 3D Structure on Q70EL2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserGenome BrowserNo orthologNo ortholog
Gene Details  Gene Details  
Gene Sorter  Gene Sorter  
  EnsemblFlyBase  
  Protein SequenceProtein Sequence  
  AlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004843 thiol-dependent ubiquitin-specific protease activity
GO:0008233 peptidase activity
GO:0008234 cysteine-type peptidase activity
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006281 DNA repair
GO:0006508 proteolysis
GO:0006511 ubiquitin-dependent protein catabolic process
GO:0016579 protein deubiquitination
GO:0070911 global genome nucleotide-excision repair

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  LF383848 - JP 2014500723-A/191351: Polycomb-Associated Non-Coding RNAs.
AK123299 - Homo sapiens cDNA FLJ41305 fis, clone BRAMY2042244.
AL832037 - Homo sapiens mRNA; cDNA DKFZp313A2010 (from clone DKFZp313A2010).
AL832040 - Homo sapiens mRNA; cDNA DKFZp313B2010 (from clone DKFZp313B2010).
AL832030 - Homo sapiens mRNA; cDNA DKFZp451O034 (from clone DKFZp451O034).
AL713747 - Homo sapiens mRNA; cDNA DKFZp451H032 (from clone DKFZp451H032).
BC150648 - Homo sapiens ubiquitin specific peptidase 45, mRNA (cDNA clone MGC:183559 IMAGE:9057019), complete cds.
BC157838 - Homo sapiens ubiquitin specific peptidase 45, mRNA (cDNA clone MGC:189733 IMAGE:9057057), complete cds.
LF353962 - JP 2014500723-A/161465: Polycomb-Associated Non-Coding RNAs.
LF353961 - JP 2014500723-A/161464: Polycomb-Associated Non-Coding RNAs.
LF353960 - JP 2014500723-A/161463: Polycomb-Associated Non-Coding RNAs.
LF353959 - JP 2014500723-A/161462: Polycomb-Associated Non-Coding RNAs.
LF353958 - JP 2014500723-A/161461: Polycomb-Associated Non-Coding RNAs.
LF353957 - JP 2014500723-A/161460: Polycomb-Associated Non-Coding RNAs.
LF353956 - JP 2014500723-A/161459: Polycomb-Associated Non-Coding RNAs.
AJ583819 - Homo sapiens mRNA for ubiquitin specific proteinase 45 (USP45 gene).
BC172477 - Synthetic construct Homo sapiens clone IMAGE:100069171, MGC:199182 ubiquitin specific peptidase 45 (USP45) mRNA, encodes complete protein.
BC156218 - Synthetic construct Homo sapiens clone IMAGE:100061542, MGC:190019 ubiquitin specific peptidase 45 (USP45) mRNA, encodes complete protein.
AK310643 - Homo sapiens cDNA, FLJ17685.
LF353947 - JP 2014500723-A/161450: Polycomb-Associated Non-Coding RNAs.
BC005991 - Homo sapiens ubiquitin specific peptidase 45, mRNA (cDNA clone IMAGE:4047601), complete cds.
KJ904932 - Synthetic construct Homo sapiens clone ccsbBroadEn_14326 USP45 gene, encodes complete protein.
CU675217 - Synthetic construct Homo sapiens gateway clone IMAGE:100016976 5' read USP45 mRNA.
LF353945 - JP 2014500723-A/161448: Polycomb-Associated Non-Coding RNAs.
LF353943 - JP 2014500723-A/161446: Polycomb-Associated Non-Coding RNAs.
LF353942 - JP 2014500723-A/161445: Polycomb-Associated Non-Coding RNAs.
LF353940 - JP 2014500723-A/161443: Polycomb-Associated Non-Coding RNAs.
MA619425 - JP 2018138019-A/191351: Polycomb-Associated Non-Coding RNAs.
MA589539 - JP 2018138019-A/161465: Polycomb-Associated Non-Coding RNAs.
MA589538 - JP 2018138019-A/161464: Polycomb-Associated Non-Coding RNAs.
MA589537 - JP 2018138019-A/161463: Polycomb-Associated Non-Coding RNAs.
MA589536 - JP 2018138019-A/161462: Polycomb-Associated Non-Coding RNAs.
MA589535 - JP 2018138019-A/161461: Polycomb-Associated Non-Coding RNAs.
MA589534 - JP 2018138019-A/161460: Polycomb-Associated Non-Coding RNAs.
MA589533 - JP 2018138019-A/161459: Polycomb-Associated Non-Coding RNAs.
MA589524 - JP 2018138019-A/161450: Polycomb-Associated Non-Coding RNAs.
MA589522 - JP 2018138019-A/161448: Polycomb-Associated Non-Coding RNAs.
MA589520 - JP 2018138019-A/161446: Polycomb-Associated Non-Coding RNAs.
MA589519 - JP 2018138019-A/161445: Polycomb-Associated Non-Coding RNAs.
MA589517 - JP 2018138019-A/161443: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q70EL2 (Reactome details) participates in the following event(s):

R-HSA-5696465 USP45 deubiquitinates ERCC1
R-HSA-5696395 Formation of Incision Complex in GG-NER
R-HSA-5696399 Global Genome Nucleotide Excision Repair (GG-NER)
R-HSA-5696398 Nucleotide Excision Repair
R-HSA-73894 DNA Repair

-  Other Names for This Gene
  Alternate Gene Symbols: B2RXG0, NM_001080481, NP_001073950, Q5T062, Q70EL2, Q86T44, Q86TC0, Q9BRU1, UBP45_HUMAN
UCSC ID: uc003ppx.2
RefSeq Accession: NM_001080481
Protein: Q70EL2 (aka UBP45_HUMAN)
CCDS: CCDS34501.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001080481.1
exon count: 18CDS single in 3' UTR: no RNA size: 6388
ORF size: 2445CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 4762.50frame shift in genome: no % Coverage: 99.97
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.