Human Gene LEMD1-DT (uc001hco.2)
  Description: Homo sapiens cDNA FLJ38314 fis, clone FCBBF3022765.
Transcript (Including UTRs)
   Position: hg19 chr1:205,425,186-205,438,152 Size: 12,967 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr1:205,425,314-205,435,755 Size: 10,442 Coding Exon Count: 3 

Page IndexSequence and LinksPrimersGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:205,425,186-205,438,152)mRNA (may differ from genome)Protein (76 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
GeneCardsH-INVMGIPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.16 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 2.72 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -39.91128-0.312 Picture PostScript Text
3' UTR -1012.312397-0.422 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LF211759 - JP 2014500723-A/19262: Polycomb-Associated Non-Coding RNAs.
AK095633 - Homo sapiens cDNA FLJ38314 fis, clone FCBBF3022765.
JD330545 - Sequence 311569 from Patent EP1572962.
JD250505 - Sequence 231529 from Patent EP1572962.
JD292609 - Sequence 273633 from Patent EP1572962.
JD348602 - Sequence 329626 from Patent EP1572962.
JD261103 - Sequence 242127 from Patent EP1572962.
JD081142 - Sequence 62166 from Patent EP1572962.
JD192961 - Sequence 173985 from Patent EP1572962.
JD256903 - Sequence 237927 from Patent EP1572962.
JD054810 - Sequence 35834 from Patent EP1572962.
JD184019 - Sequence 165043 from Patent EP1572962.
JD281507 - Sequence 262531 from Patent EP1572962.
JD495986 - Sequence 477010 from Patent EP1572962.
JD540302 - Sequence 521326 from Patent EP1572962.
JD384784 - Sequence 365808 from Patent EP1572962.
JD460973 - Sequence 441997 from Patent EP1572962.
JD209497 - Sequence 190521 from Patent EP1572962.
JD075938 - Sequence 56962 from Patent EP1572962.
JD228552 - Sequence 209576 from Patent EP1572962.
JD486951 - Sequence 467975 from Patent EP1572962.
JD342034 - Sequence 323058 from Patent EP1572962.
JD118722 - Sequence 99746 from Patent EP1572962.
JD264304 - Sequence 245328 from Patent EP1572962.
JD562896 - Sequence 543920 from Patent EP1572962.
JD317088 - Sequence 298112 from Patent EP1572962.
JD302614 - Sequence 283638 from Patent EP1572962.
JD509053 - Sequence 490077 from Patent EP1572962.
JD062702 - Sequence 43726 from Patent EP1572962.
JD482130 - Sequence 463154 from Patent EP1572962.
JD501092 - Sequence 482116 from Patent EP1572962.
JD066809 - Sequence 47833 from Patent EP1572962.
JD184190 - Sequence 165214 from Patent EP1572962.
JD093069 - Sequence 74093 from Patent EP1572962.
JD561422 - Sequence 542446 from Patent EP1572962.
JD281989 - Sequence 263013 from Patent EP1572962.
JD230074 - Sequence 211098 from Patent EP1572962.
JD269640 - Sequence 250664 from Patent EP1572962.
JD320171 - Sequence 301195 from Patent EP1572962.
JD350895 - Sequence 331919 from Patent EP1572962.
JD197969 - Sequence 178993 from Patent EP1572962.
MA447336 - JP 2018138019-A/19262: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: AK095633, uc001hco.1
UCSC ID: uc001hco.2
Representative RNA: AK095633

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK095633.1
exon count: 3CDS single in 3' UTR: no RNA size: 2758
ORF size: 231CDS single in intron: no Alignment % ID: 99.89
txCdsPredict score: 630.00frame shift in genome: no % Coverage: 99.93
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.