Human Gene RP5-1142A6.8 (uc010cic.1)
  Description: Homo sapiens cDNA RP5-1142A6.8 fis, clone TESTI2040815.
Transcript (Including UTRs)
   Position: hg19 chr16:88,809,229-88,812,156 Size: 2,928 Total Exon Count: 2 Strand: +


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:88,809,229-88,812,156)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
H-INVLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.78 RPKM in Testis
Total median expression: 6.15 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK097767 - Homo sapiens cDNA FLJ40448 fis, clone TESTI2040815.
BC111769 - Homo sapiens hypothetical protein FLJ40448, mRNA (cDNA clone MGC:133175 IMAGE:40025355), complete cds.
JD536756 - Sequence 517780 from Patent EP1572962.
JD416813 - Sequence 397837 from Patent EP1572962.
JD544182 - Sequence 525206 from Patent EP1572962.
JD218218 - Sequence 199242 from Patent EP1572962.
JD249398 - Sequence 230422 from Patent EP1572962.
JD559990 - Sequence 541014 from Patent EP1572962.
JD264837 - Sequence 245861 from Patent EP1572962.
JD178774 - Sequence 159798 from Patent EP1572962.
JD446049 - Sequence 427073 from Patent EP1572962.
JD433819 - Sequence 414843 from Patent EP1572962.
JD301786 - Sequence 282810 from Patent EP1572962.
JD036977 - Sequence 18001 from Patent EP1572962.
JD222432 - Sequence 203456 from Patent EP1572962.
JD273223 - Sequence 254247 from Patent EP1572962.
JD342610 - Sequence 323634 from Patent EP1572962.
JD221401 - Sequence 202425 from Patent EP1572962.
JD114812 - Sequence 95836 from Patent EP1572962.
JD422904 - Sequence 403928 from Patent EP1572962.
JD079894 - Sequence 60918 from Patent EP1572962.
JD322107 - Sequence 303131 from Patent EP1572962.
JD324550 - Sequence 305574 from Patent EP1572962.
JD453210 - Sequence 434234 from Patent EP1572962.
JD108350 - Sequence 89374 from Patent EP1572962.
JD108351 - Sequence 89375 from Patent EP1572962.
JD376201 - Sequence 357225 from Patent EP1572962.
JD158604 - Sequence 139628 from Patent EP1572962.
JD160035 - Sequence 141059 from Patent EP1572962.
JD202971 - Sequence 183995 from Patent EP1572962.
JD108362 - Sequence 89386 from Patent EP1572962.
JD390349 - Sequence 371373 from Patent EP1572962.
JD187956 - Sequence 168980 from Patent EP1572962.
JD144766 - Sequence 125790 from Patent EP1572962.
JD158964 - Sequence 139988 from Patent EP1572962.
JD158965 - Sequence 139989 from Patent EP1572962.
JD208759 - Sequence 189783 from Patent EP1572962.
JD208760 - Sequence 189784 from Patent EP1572962.
JD112138 - Sequence 93162 from Patent EP1572962.
JD356960 - Sequence 337984 from Patent EP1572962.
JD119082 - Sequence 100106 from Patent EP1572962.
JD144523 - Sequence 125547 from Patent EP1572962.
JD179091 - Sequence 160115 from Patent EP1572962.
JD447286 - Sequence 428310 from Patent EP1572962.
JD366345 - Sequence 347369 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK097767, FLJ40448
UCSC ID: uc010cic.1
Representative RNA: AK097767

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: yes RNA accession: AK097767.1
exon count: 2CDS single in 3' UTR: no RNA size: 2140
ORF size: 0CDS single in intron: no Alignment % ID: 99.44
txCdsPredict score: 682.00frame shift in genome: no % Coverage: 97.34
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.