Human Gene AQP4-AS1 (uc002kwb.2)
  Description: Homo sapiens AQP4 antisense RNA 1 (AQP4-AS1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr18:24,445,272-24,515,910 Size: 70,639 Total Exon Count: 8 Strand: +


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr18:24,445,272-24,515,910)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerH-INVHGNCLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.02 RPKM in Brain - Caudate (basal ganglia)
Total median expression: 8.75 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC043377 - Homo sapiens, clone IMAGE:5200764, mRNA.
AK055069 - Homo sapiens cDNA FLJ30507 fis, clone BRAWH2000554.
JD327563 - Sequence 308587 from Patent EP1572962.
JD372157 - Sequence 353181 from Patent EP1572962.
JD111333 - Sequence 92357 from Patent EP1572962.
JD158393 - Sequence 139417 from Patent EP1572962.
JD223586 - Sequence 204610 from Patent EP1572962.
JD366102 - Sequence 347126 from Patent EP1572962.
JD055917 - Sequence 36941 from Patent EP1572962.
JD393804 - Sequence 374828 from Patent EP1572962.
JD428296 - Sequence 409320 from Patent EP1572962.
JD293239 - Sequence 274263 from Patent EP1572962.
JD321234 - Sequence 302258 from Patent EP1572962.
JD388790 - Sequence 369814 from Patent EP1572962.
JD274852 - Sequence 255876 from Patent EP1572962.
JD086594 - Sequence 67618 from Patent EP1572962.
JD086593 - Sequence 67617 from Patent EP1572962.
JD255611 - Sequence 236635 from Patent EP1572962.
JD401270 - Sequence 382294 from Patent EP1572962.
JD159744 - Sequence 140768 from Patent EP1572962.
JD542980 - Sequence 524004 from Patent EP1572962.
JD213286 - Sequence 194310 from Patent EP1572962.
JD059659 - Sequence 40683 from Patent EP1572962.
JD534093 - Sequence 515117 from Patent EP1572962.
JD473339 - Sequence 454363 from Patent EP1572962.
JD352702 - Sequence 333726 from Patent EP1572962.
JD419832 - Sequence 400856 from Patent EP1572962.
JD299536 - Sequence 280560 from Patent EP1572962.
JD362529 - Sequence 343553 from Patent EP1572962.
BC105127 - Homo sapiens chromosome 18 open reading frame 16, mRNA (cDNA clone IMAGE:8144130).
BC112070 - Homo sapiens chromosome 18 open reading frame 16, mRNA (cDNA clone IMAGE:8327538).
JD507059 - Sequence 488083 from Patent EP1572962.
KJ901157 - Synthetic construct Homo sapiens clone ccsbBroadEn_10551 CHST9-AS1 gene, encodes complete protein.
JD203780 - Sequence 184804 from Patent EP1572962.
JD064561 - Sequence 45585 from Patent EP1572962.
JD074150 - Sequence 55174 from Patent EP1572962.
JD488193 - Sequence 469217 from Patent EP1572962.
JD468697 - Sequence 449721 from Patent EP1572962.
JD239426 - Sequence 220450 from Patent EP1572962.
JD053274 - Sequence 34298 from Patent EP1572962.
JD299181 - Sequence 280205 from Patent EP1572962.
JD516519 - Sequence 497543 from Patent EP1572962.
JD509824 - Sequence 490848 from Patent EP1572962.
JD377075 - Sequence 358099 from Patent EP1572962.
JD226302 - Sequence 207326 from Patent EP1572962.
JD232401 - Sequence 213425 from Patent EP1572962.
JD316579 - Sequence 297603 from Patent EP1572962.
JD315553 - Sequence 296577 from Patent EP1572962.
JD563339 - Sequence 544363 from Patent EP1572962.
JD239317 - Sequence 220341 from Patent EP1572962.
JD053120 - Sequence 34144 from Patent EP1572962.
JD550860 - Sequence 531884 from Patent EP1572962.
JD082780 - Sequence 63804 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_026908
UCSC ID: uc002kwb.2
RefSeq Accession: NR_026908

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_026908.1
exon count: 8CDS single in 3' UTR: no RNA size: 2392
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 485.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.