Human Gene GPR161 (uc009wvo.4)
  Description: Homo sapiens G protein-coupled receptor 161 (GPR161), transcript variant 4, mRNA.
RefSeq Summary (NM_001267611): The protein encoded by this gene is an orphan G protein-coupled receptor whose ligand is unknown. This gene is overexpressed in triple-negative breast cancer, and disruption of this gene slows the proliferation of basal breast cancer cells. Therefore, this gene is a potential drug target for triple-negative breast cancer. [provided by RefSeq, Mar 2017]. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments.
Transcript (Including UTRs)
   Position: hg19 chr1:168,048,780-168,106,811 Size: 58,032 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr1:168,054,769-168,106,634 Size: 51,866 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:168,048,780-168,106,811)mRNA (may differ from genome)Protein (546 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
H-INVHGNCHuman Cortex Gene ExpressionLynxMalacardsMGI
OMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: F5GXD6_HUMAN
DESCRIPTION: SubName: Full=G-protein-coupled receptor 161;
SIMILARITY: Belongs to the G-protein coupled receptor 1 family.
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): GPR161
CDC HuGE Published Literature: GPR161

-  MalaCards Disease Associations
  MalaCards Gene Search: GPR161
Diseases sorted by gene-association score: pituitary stalk interruption syndrome* (175), spindle cell hemangioma (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.31 RPKM in Uterus
Total median expression: 94.02 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -67.70177-0.382 Picture PostScript Text
3' UTR -2076.155989-0.347 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_supfam

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on F5GXD6
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK091271 - Homo sapiens cDNA FLJ33952 fis, clone CTONG2018614.
AX746887 - Sequence 412 from Patent EP1308459.
AK026059 - Homo sapiens cDNA: FLJ22406 fis, clone HRC08351.
AK095302 - Homo sapiens cDNA FLJ37983 fis, clone CTONG2010649.
JD063049 - Sequence 44073 from Patent EP1572962.
JD204571 - Sequence 185595 from Patent EP1572962.
JD147494 - Sequence 128518 from Patent EP1572962.
JD197069 - Sequence 178093 from Patent EP1572962.
JD395744 - Sequence 376768 from Patent EP1572962.
JD107682 - Sequence 88706 from Patent EP1572962.
DQ591555 - Homo sapiens piRNA piR-58667, complete sequence.
JD020489 - Sequence 1513 from Patent EP1572962.
JD034220 - Sequence 15244 from Patent EP1572962.
JD030206 - Sequence 11230 from Patent EP1572962.
BC028163 - Homo sapiens G protein-coupled receptor 161, mRNA (cDNA clone MGC:39957 IMAGE:5246359), complete cds.
JD043764 - Sequence 24788 from Patent EP1572962.
JD323910 - Sequence 304934 from Patent EP1572962.
JD209855 - Sequence 190879 from Patent EP1572962.
JD186197 - Sequence 167221 from Patent EP1572962.
JD261809 - Sequence 242833 from Patent EP1572962.
JD411383 - Sequence 392407 from Patent EP1572962.
JD536641 - Sequence 517665 from Patent EP1572962.
JD233109 - Sequence 214133 from Patent EP1572962.
JD454592 - Sequence 435616 from Patent EP1572962.
JD216115 - Sequence 197139 from Patent EP1572962.
AK091869 - Homo sapiens cDNA FLJ34550 fis, clone HLUNG2009303.
AX747230 - Sequence 755 from Patent EP1308459.
AK056040 - Homo sapiens cDNA FLJ31478 fis, clone NT2NE2001626, highly similar to Probable G-protein coupled receptor 161.
AK298797 - Homo sapiens cDNA FLJ56129 complete cds, highly similar to Probable G-protein coupled receptor 161.
AK299634 - Homo sapiens cDNA FLJ55903 complete cds, highly similar to Probable G-protein coupled receptor 161.
AK298850 - Homo sapiens cDNA FLJ56130 complete cds, highly similar to Probable G-protein coupled receptor 161.
AK122656 - Homo sapiens cDNA FLJ16090 fis, clone OCBBF2001323, highly similar to Probable G-protein coupled receptor 161.
JD297420 - Sequence 278444 from Patent EP1572962.
JD287784 - Sequence 268808 from Patent EP1572962.
AK310019 - Homo sapiens cDNA, FLJ17061.
JD370844 - Sequence 351868 from Patent EP1572962.
JD368296 - Sequence 349320 from Patent EP1572962.
JD112663 - Sequence 93687 from Patent EP1572962.
JD407029 - Sequence 388053 from Patent EP1572962.
KJ893372 - Synthetic construct Homo sapiens clone ccsbBroadEn_02766 GPR161 gene, encodes complete protein.
AY275468 - Homo sapiens G-protein coupled receptor RE2 mRNA, complete cds.
DQ893369 - Synthetic construct clone IMAGE:100005999; FLH196690.01X; RZPDo839G07156D G protein-coupled receptor 161 (GPR161) gene, encodes complete protein.
DQ896689 - Synthetic construct Homo sapiens clone IMAGE:100011149; FLH196686.01L; RZPDo839G07155D G protein-coupled receptor 161 (GPR161) gene, encodes complete protein.
AF091890 - Homo sapiens G-protein coupled receptor RE2 mRNA, complete cds.
JD185566 - Sequence 166590 from Patent EP1572962.
JD121642 - Sequence 102666 from Patent EP1572962.
JD383234 - Sequence 364258 from Patent EP1572962.
JD375329 - Sequence 356353 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: F5GXD6, F5GXD6_HUMAN, NM_001267611, NP_001254540, uc009wvo.3
UCSC ID: uc009wvo.4
RefSeq Accession: NM_001267611
Protein: F5GXD6 CCDS: CCDS1268.1, CCDS58043.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001267611.1
exon count: 6CDS single in 3' UTR: no RNA size: 7815
ORF size: 1641CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3346.00frame shift in genome: no % Coverage: 99.90
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.