Human Gene TRGV5 (uc022aca.1) |
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 Sequence and Links to Tools and Databases
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Primer design for this transcript
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 Common Gene Haplotype Alleles
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Press "+" in the title bar above to open this section.
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
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The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
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Protein Domain and Structure Information
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InterPro Domains: Graphical view of domain structure
IPR013783 - Ig-like_fold
IPR003599 - Ig_sub
IPR013106 - Ig_V-set
Pfam Domains:
PF07686 - Immunoglobulin V-set domain
SCOP Domains:
48726 - Immunoglobulin
89260 - Collagen-binding domain
ModBase Predicted Comparative 3D Structure on A2NUW5
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
| Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
| No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
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Descriptions from all associated GenBank mRNAs
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X15019 - Human CII mRNA for T-cell receptor gamma (GC12) V-J(gamma)2.
Y00482 - Human mRNA for T-cell receptor gamma chain (gamma-TCR).
X04040 - Human mRNA for T-cell receptor gamma V-J junction (Vg-1.1, Jg-2).
BC035592 - Homo sapiens T cell receptor gamma variable 5, mRNA (cDNA clone IMAGE:5575279).
LP896479 - Sequence 1343 from Patent EP3253886.
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Other Names for This Gene
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Alternate Gene Symbols: A2NUW5, A2NUW5_HUMAN, Y00482
UCSC ID: uc022aca.1
Representative RNA: Y00482
Protein: A2NUW5
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Gene Model Information
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| category:
| coding
| nonsense-mediated-decay:
| no
| RNA accession:
| Y00482.1
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| exon count:
| 2 | CDS single in 3' UTR:
| no
| RNA size:
| 436 |
| ORF size:
| 597 | CDS single in intron:
| no
| Alignment % ID:
| 99.31 |
| txCdsPredict score:
| 1342.00 | frame shift in genome:
| no
| % Coverage:
| 80.96 |
| has start codon:
| yes
| stop codon in genome:
| no
| # of Alignments:
| 1 |
| has end codon:
| no
| retained intron:
| no
| # AT/AC introns
| 0 |
| selenocysteine:
| no
| end bleed into intron:
| 0 | # strange splices:
| 0 |
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for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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US Server
