Human Gene GSTT2 (uc002zzb.4)
  Description: Homo sapiens glutathione S-transferase theta 2 (GSTT2), mRNA.
RefSeq Summary (NM_000854): The protein encoded by this gene, glutathione S-transferase (GST) theta 2 (GSTT2), is a member of a superfamily of proteins that catalyze the conjugation of reduced glutathione to a variety of electrophilic and hydrophobic compounds. Human GSTs can be divided into five main classes: alpha, mu, pi, theta, and zeta. The theta class includes GSTT1, GSTT2, and GSTT2B. GSTT2 and GSTT2B are nearly identical to each other, and share 55% amino acid identity with GSTT1. All three genes may play a role in human carcinogenesis. The GSTT2 gene is a pseudogene in some populations. [provided by RefSeq, Sep 2015].
Transcript (Including UTRs)
   Position: hg19 chr22:24,322,314-24,326,106 Size: 3,793 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr22:24,322,389-24,325,797 Size: 3,409 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:24,322,314-24,326,106)mRNA (may differ from genome)Protein (244 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
H-INVHGNCHPRDLynxMalacardsMGI
neXtProtOMIMPubMedReactomeTreefamUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GSTT2_HUMAN
DESCRIPTION: RecName: Full=Glutathione S-transferase theta-2B; EC=2.5.1.18; AltName: Full=GST class-theta-2; AltName: Full=Glutathione S-transferase theta-2;
FUNCTION: Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles. Has a sulfatase activity.
CATALYTIC ACTIVITY: RX + glutathione = HX + R-S-glutathione.
SUBUNIT: Homodimer.
SUBCELLULAR LOCATION: Cytoplasm.
TISSUE SPECIFICITY: Expressed at low levels in liver. In lung, expressed at low levels in ciliated bronchiolar cells, alveolar macrophages and alveolar type II cells.
SIMILARITY: Belongs to the GST superfamily. Theta family.
SIMILARITY: Contains 1 GST C-terminal domain.
SIMILARITY: Contains 1 GST N-terminal domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): GSTT2
CDC HuGE Published Literature: GSTT2
Positive Disease Associations: colorectal cancer
Related Studies:
  1. colorectal cancer
    Jang, S. G. et al. 2007, GSTT2 promoter polymorphisms and colorectal cancer risk, BMC Cancer 2007 7(1) 16. [PubMed 17250773]
    Our results collectively suggest that SNPs and haplotypes of the GSTT2 promoter region are associated with colorectal cancer risk in the Korean population.

-  MalaCards Disease Associations
  MalaCards Gene Search: GSTT2
Diseases sorted by gene-association score: colon adenoma (22), deafness, autosomal recessive 12 (8), barrett's adenocarcinoma (6), colonic benign neoplasm (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.79 RPKM in Adrenal Gland
Total median expression: 77.24 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -9.9475-0.133 Picture PostScript Text
3' UTR -78.40309-0.254 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR010987 - Glutathione-S-Trfase_C-like
IPR004045 - Glutathione_S-Trfase_N
IPR017933 - Glutathione_S_Trfase/Cl_chnl_C
IPR004046 - GST_C
IPR012336 - Thioredoxin-like_fold

Pfam Domains:
PF00043 - Glutathione S-transferase, C-terminal domain
PF02798 - Glutathione S-transferase, N-terminal domain
PF13409 - Glutathione S-transferase, N-terminal domain
PF13410 - Glutathione S-transferase, C-terminal domain
PF13417 - Glutathione S-transferase, N-terminal domain

SCOP Domains:
47616 - Glutathione S-transferase (GST), C-terminal domain
52833 - Thioredoxin-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1LJR - X-ray MuPIT 2LJR - X-ray MuPIT 3LJR - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P0CG30
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004364 glutathione transferase activity
GO:0016740 transferase activity

Biological Process:
GO:0006749 glutathione metabolic process
GO:1901687 glutathione derivative biosynthetic process

Cellular Component:
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC146940 - Homo sapiens glutathione S-transferase theta 2, mRNA (cDNA clone MGC:182043 IMAGE:9056868), complete cds.
BC146943 - Homo sapiens glutathione S-transferase theta 2, mRNA (cDNA clone MGC:182046 IMAGE:9056871), complete cds.
AK312043 - Homo sapiens cDNA, FLJ92320, highly similar to Homo sapiens glutathione S-transferase theta 2 (GSTT2), mRNA.
BC002415 - Homo sapiens glutathione S-transferase theta 2, mRNA (cDNA clone MGC:744 IMAGE:3164017), complete cds.
BC146929 - Homo sapiens glutathione S-transferase theta 2B (gene/pseudogene), mRNA (cDNA clone MGC:182032 IMAGE:9056857), complete cds.
BC146936 - Homo sapiens glutathione S-transferase theta 2B (gene/pseudogene), mRNA (cDNA clone MGC:182039 IMAGE:9056864), complete cds.
CR456374 - Homo sapiens Em:AP000351.3 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.Em:AP000351.3).
BC071700 - Homo sapiens glutathione S-transferase theta 2B (gene/pseudogene), mRNA (cDNA clone MGC:87963 IMAGE:4932043), complete cds.
JD161476 - Sequence 142500 from Patent EP1572962.
CR456500 - Homo sapiens GSTT2 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.GSTT2).
JD405449 - Sequence 386473 from Patent EP1572962.
AB528145 - Synthetic construct DNA, clone: pF1KE0527, Homo sapiens GSTT2 gene for glutathione S-transferase theta 2, without stop codon, in Flexi system.
KJ896943 - Synthetic construct Homo sapiens clone ccsbBroadEn_06337 GSTT2 gene, encodes complete protein.
KJ900800 - Synthetic construct Homo sapiens clone ccsbBroadEn_10194 GSTT2B gene, encodes complete protein.
CU013367 - Homo sapiens GSTT2, mRNA (cDNA clone IMAGE:100000242), complete cds, without stop codon, in Gateway system.
CU013385 - Homo sapiens GSTT2, mRNA (cDNA clone IMAGE:100000260), complete cds, without stop codon, in Gateway system.
DQ890742 - Synthetic construct clone IMAGE:100003372; FLH165608.01X; RZPDo839E06160D glutathione S-transferase theta 2 (GSTT2) gene, encodes complete protein.
CU013079 - Homo sapiens GSTT2, mRNA (cDNA clone IMAGE:100000338), complete cds, with stop codon, in Gateway system.
CU013097 - Homo sapiens GSTT2, mRNA (cDNA clone IMAGE:100000356), complete cds, with stop codon, in Gateway system.
CR456929 - Homo sapiens full open reading frame cDNA clone RZPDo834H1215D for gene GSTT2, glutathione S-transferase theta 2; complete cds, incl. stopcodon.
L38503 - Homo sapiens glutathione S-transferase theta 2 (GSTT2) mRNA, complete cds.
JD405377 - Sequence 386401 from Patent EP1572962.
JD431627 - Sequence 412651 from Patent EP1572962.
JD385022 - Sequence 366046 from Patent EP1572962.
JD372159 - Sequence 353183 from Patent EP1572962.
JD232582 - Sequence 213606 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00480 - Glutathione metabolism
hsa00980 - Metabolism of xenobiotics by cytochrome P450
hsa00982 - Drug metabolism - cytochrome P450

BioCyc Knowledge Library
PWY-4061 - glutathione-mediated detoxification

Reactome (by CSHL, EBI, and GO)

Protein P0CG30 (Reactome details) participates in the following event(s):

R-HSA-176054 GST dimers conjugate GSH with cytosolic substrates
R-HSA-156590 Glutathione conjugation
R-HSA-156580 Phase II - Conjugation of compounds
R-HSA-211859 Biological oxidations
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: GSTT2B, GSTT2_HUMAN, NM_000854, NP_001074312, O60665, P0CG30, P30712, Q6IPV7, Q9HD76
UCSC ID: uc002zzb.4
RefSeq Accession: NM_000854
Protein: P0CG30 (aka GSTT2_HUMAN)
CCDS: CCDS13821.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_000854.3
exon count: 5CDS single in 3' UTR: no RNA size: 1136
ORF size: 735CDS single in intron: no Alignment % ID: 99.91
txCdsPredict score: 935.00frame shift in genome: no % Coverage: 98.50
has start codon: yes stop codon in genome: no # of Alignments: 2
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.