Human Gene TMEM198 (uc002vmf.3)
Description: Homo sapiens transmembrane protein 198 (TMEM198), mRNA.
Transcript (Including UTRs)
Position: hg19 chr2:220,408,745-220,415,317 Size: 6,573 Total Exon Count: 5 Strand: +
Coding Region
Position: hg19 chr2:220,409,450-220,414,576 Size: 5,127 Coding Exon Count: 4
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: TM198_HUMAN
DESCRIPTION: RecName: Full=Transmembrane protein 198;
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein (Potential).SIMILARITY: Belongs to the TMEM198 family.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR025256 - DUF4203
Pfam Domains: PF13886 - Domain of unknown function (DUF4203)
ModBase Predicted Comparative 3D Structure on Q66K66
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
LF205258 - JP 2014500723-A/12761: Polycomb-Associated Non-Coding RNAs.BC068567 - Homo sapiens similar to RIKEN cDNA A230078I05 gene, mRNA (cDNA clone IMAGE:5275321).BC080573 - Homo sapiens transmembrane protein 198, mRNA (cDNA clone MGC:99813 IMAGE:6569597), complete cds.JD514838 - Sequence 495862 from Patent EP1572962.JD075895 - Sequence 56919 from Patent EP1572962.JD550485 - Sequence 531509 from Patent EP1572962.JD125333 - Sequence 106357 from Patent EP1572962.JD210467 - Sequence 191491 from Patent EP1572962.JD260624 - Sequence 241648 from Patent EP1572962.JD451053 - Sequence 432077 from Patent EP1572962.JD193508 - Sequence 174532 from Patent EP1572962.JD296972 - Sequence 277996 from Patent EP1572962.JD104315 - Sequence 85339 from Patent EP1572962.CU687342 - Synthetic construct Homo sapiens gateway clone IMAGE:100023127 5' read MGC99813 mRNA.HQ447518 - Synthetic construct Homo sapiens clone IMAGE:100070857; CCSB015008_01 similar to RIKEN cDNA A230078I05 gene (TMEM198) gene, encodes complete protein.LF318663 - JP 2014500723-A/126166: Polycomb-Associated Non-Coding RNAs.AK302369 - Homo sapiens cDNA FLJ55861 complete cds.AK123175 - Homo sapiens cDNA FLJ41180 fis, clone BRACE2043142.LF318664 - JP 2014500723-A/126167: Polycomb-Associated Non-Coding RNAs.JD086673 - Sequence 67697 from Patent EP1572962.JD398953 - Sequence 379977 from Patent EP1572962.JD167558 - Sequence 148582 from Patent EP1572962.JD383914 - Sequence 364938 from Patent EP1572962.JD101255 - Sequence 82279 from Patent EP1572962.JD120880 - Sequence 101904 from Patent EP1572962.JD528035 - Sequence 509059 from Patent EP1572962.JD485869 - Sequence 466893 from Patent EP1572962.JD472937 - Sequence 453961 from Patent EP1572962.JD066895 - Sequence 47919 from Patent EP1572962.JD190604 - Sequence 171628 from Patent EP1572962.JD487532 - Sequence 468556 from Patent EP1572962.JD240239 - Sequence 221263 from Patent EP1572962.JD164239 - Sequence 145263 from Patent EP1572962.JD148112 - Sequence 129136 from Patent EP1572962.JD477208 - Sequence 458232 from Patent EP1572962.JD112749 - Sequence 93773 from Patent EP1572962.JD492983 - Sequence 474007 from Patent EP1572962.JD273574 - Sequence 254598 from Patent EP1572962.MA440835 - JP 2018138019-A/12761: Polycomb-Associated Non-Coding RNAs.MA554240 - JP 2018138019-A/126166: Polycomb-Associated Non-Coding RNAs.MA554241 - JP 2018138019-A/126167: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: NM_001005209, NP_001005209, Q66K66, TM198_HUMANUCSC ID: uc002vmf.3RefSeq Accession: NM_001005209
Protein: Q66K66
(aka TM198_HUMAN)
CCDS: CCDS33385.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_001005209.1
exon count:
5 CDS single in 3' UTR:
no
RNA size:
2239
ORF size:
1083 CDS single in intron:
no
Alignment % ID:
99.91
txCdsPredict score:
2057.00 frame shift in genome:
no
% Coverage:
99.06
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
123 # strange splices:
0
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Methods, Credits, and Use Restrictions
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