Human Gene PRAMEF10 (uc001auz.4) Description and Page Index
  Description: Homo sapiens PRAME family member 10, mRNA (cDNA clone MGC:138413 IMAGE:8327676), complete cds.
Transcript (Including UTRs)
   Position: hg19 chr1:13,629,938-13,635,299 Size: 5,362 Total Exon Count: 4 Strand: +


Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:13,629,938-13,635,299)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
CGAPEnsemblExonPrimerHGNCLynxPubMed
Stanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.00 RPKM in Adipose - Subcutaneous
Total median expression: 0.00 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC112208 - Homo sapiens PRAME family member 10, mRNA (cDNA clone MGC:138413 IMAGE:8327676), complete cds.
BC112210 - Homo sapiens PRAME family member 10, mRNA (cDNA clone MGC:138415 IMAGE:8327678), complete cds.
KJ900650 - Synthetic construct Homo sapiens clone ccsbBroadEn_10044 PRAMEF10 gene, encodes complete protein.
JD265566 - Sequence 246590 from Patent EP1572962.
JD432113 - Sequence 413137 from Patent EP1572962.
JD539988 - Sequence 521012 from Patent EP1572962.
JD555642 - Sequence 536666 from Patent EP1572962.
JD036562 - Sequence 17586 from Patent EP1572962.
JD205438 - Sequence 186462 from Patent EP1572962.
JD165569 - Sequence 146593 from Patent EP1572962.
JD143588 - Sequence 124612 from Patent EP1572962.
JD143589 - Sequence 124613 from Patent EP1572962.
JD539770 - Sequence 520794 from Patent EP1572962.
JD124352 - Sequence 105376 from Patent EP1572962.
JD307962 - Sequence 288986 from Patent EP1572962.
JD227087 - Sequence 208111 from Patent EP1572962.
JD399778 - Sequence 380802 from Patent EP1572962.
JD193893 - Sequence 174917 from Patent EP1572962.
JD241891 - Sequence 222915 from Patent EP1572962.
JD079199 - Sequence 60223 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC112210
UCSC ID: uc001auz.4
Representative RNA: BC112210

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: yes RNA accession: BC112210.1
exon count: 4CDS single in 3' UTR: no RNA size: 1521
ORF size: 0CDS single in intron: no Alignment % ID: 99.67
txCdsPredict score: 1318.00frame shift in genome: no % Coverage: 99.41
has start codon: yes stop codon in genome: no # of Alignments: 2
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.