Human Gene SUSD5 (uc003cfo.1)
Description: Homo sapiens sushi domain containing 5 (SUSD5), mRNA.
Transcript (Including UTRs)
Position: hg19 chr3:33,191,537-33,260,707 Size: 69,171 Total Exon Count: 5 Strand: -
Coding Region
Position: hg19 chr3:33,194,234-33,260,289 Size: 66,056 Coding Exon Count: 5
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: SUSD5_HUMAN
DESCRIPTION: RecName: Full=Sushi domain-containing protein 5; Flags: Precursor;
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.SIMILARITY: Contains 1 Link domain.SIMILARITY: Contains 1 Sushi (CCP/SCR) domain.SEQUENCE CAUTION: Sequence=BAA25453.1; Type=Erroneous initiation;
Primer design for this transcript
Genetic Association Studies of Complex Diseases and Disorders
Genetic Association Database (archive): SUSD5
CDC HuGE Published Literature: SUSD5
Positive Disease Associations: Tunica Media
Related Studies: Tunica Media , , .
[PubMed 0 ]
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR016186 - C-type_lectin-like
IPR016187 - C-type_lectin_fold
IPR016060 - Complement_control_module
IPR000538 - Link
IPR000436 - Sushi_SCR_CCP
Pfam Domains: PF00193 - Extracellular link domain
SCOP Domains: 56436 - C-type lectin-like
57535 - Complement control module/SCR domain
ModBase Predicted Comparative 3D Structure on O60279
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AB011099 - Homo sapiens KIAA0527 mRNA for KIAA0527 protein.JD488694 - Sequence 469718 from Patent EP1572962.JD088804 - Sequence 69828 from Patent EP1572962.JD063196 - Sequence 44220 from Patent EP1572962.JD236378 - Sequence 217402 from Patent EP1572962.JD559812 - Sequence 540836 from Patent EP1572962.JD300198 - Sequence 281222 from Patent EP1572962.JD091082 - Sequence 72106 from Patent EP1572962.JD358175 - Sequence 339199 from Patent EP1572962.JD189546 - Sequence 170570 from Patent EP1572962.JD502796 - Sequence 483820 from Patent EP1572962.JD233270 - Sequence 214294 from Patent EP1572962.JD051820 - Sequence 32844 from Patent EP1572962.JD257426 - Sequence 238450 from Patent EP1572962.JD305242 - Sequence 286266 from Patent EP1572962.JD068017 - Sequence 49041 from Patent EP1572962.JD290347 - Sequence 271371 from Patent EP1572962.JD074206 - Sequence 55230 from Patent EP1572962.JD555004 - Sequence 536028 from Patent EP1572962.JD298978 - Sequence 280002 from Patent EP1572962.JD334732 - Sequence 315756 from Patent EP1572962.JD434637 - Sequence 415661 from Patent EP1572962.JD177602 - Sequence 158626 from Patent EP1572962.JD357870 - Sequence 338894 from Patent EP1572962.JD081488 - Sequence 62512 from Patent EP1572962.JD311663 - Sequence 292687 from Patent EP1572962.JD379616 - Sequence 360640 from Patent EP1572962.JD342072 - Sequence 323096 from Patent EP1572962.JD397314 - Sequence 378338 from Patent EP1572962.JD397315 - Sequence 378339 from Patent EP1572962.JD070009 - Sequence 51033 from Patent EP1572962.JD514047 - Sequence 495071 from Patent EP1572962.JD121114 - Sequence 102138 from Patent EP1572962.JD381331 - Sequence 362355 from Patent EP1572962.JD381332 - Sequence 362356 from Patent EP1572962.JD070010 - Sequence 51034 from Patent EP1572962.JD514048 - Sequence 495072 from Patent EP1572962.JD536583 - Sequence 517607 from Patent EP1572962.JD444163 - Sequence 425187 from Patent EP1572962.JD532596 - Sequence 513620 from Patent EP1572962.JD273319 - Sequence 254343 from Patent EP1572962.JD148400 - Sequence 129424 from Patent EP1572962.JD148399 - Sequence 129423 from Patent EP1572962.JD063879 - Sequence 44903 from Patent EP1572962.JD282460 - Sequence 263484 from Patent EP1572962.JD324663 - Sequence 305687 from Patent EP1572962.JD481716 - Sequence 462740 from Patent EP1572962.JD067760 - Sequence 48784 from Patent EP1572962.AK295869 - Homo sapiens cDNA FLJ56620 complete cds.JD369399 - Sequence 350423 from Patent EP1572962.JD068168 - Sequence 49192 from Patent EP1572962.DQ589690 - Homo sapiens piRNA piR-56802, complete sequence.DQ587181 - Homo sapiens piRNA piR-54293, complete sequence.JD391737 - Sequence 372761 from Patent EP1572962.JD461097 - Sequence 442121 from Patent EP1572962.JD478014 - Sequence 459038 from Patent EP1572962.JD103983 - Sequence 85007 from Patent EP1572962.JD419569 - Sequence 400593 from Patent EP1572962.JD256681 - Sequence 237705 from Patent EP1572962.JD114935 - Sequence 95959 from Patent EP1572962.JD409246 - Sequence 390270 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: KIAA0527, NM_015551, NP_056366, O60279, SUSD5_HUMANUCSC ID: uc003cfo.1RefSeq Accession: NM_015551
Protein: O60279
(aka SUSD5_HUMAN)
CCDS: CCDS46787.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_015551.1
exon count:
5 CDS single in 3' UTR:
no
RNA size:
5005
ORF size:
1890 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
3980.00 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.