Human Gene WASH7P (uc009viw.2)
  Description: Homo sapiens WAS protein family homolog 7 pseudogene (WASH7P), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr1:14,407-29,370 Size: 14,964 Total Exon Count: 7 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:14,407-29,370)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
EnsemblExonPrimerH-INVHGNCLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 13.25 RPKM in Prostate
Total median expression: 374.16 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC015400 - Homo sapiens WAS protein family homolog 2 pseudogene, mRNA (cDNA clone IMAGE:4156973).
BC110991 - Homo sapiens CXYorf1-related protein, mRNA (cDNA clone IMAGE:5241002).
BC073913 - Homo sapiens WAS protein family homolog 2 pseudogene, mRNA (cDNA clone IMAGE:5163655).
BC093083 - Homo sapiens WAS protein family homolog 2 pseudogene, mRNA (cDNA clone IMAGE:30388014).
BC063555 - Homo sapiens CXYorf1-related protein, mRNA (cDNA clone IMAGE:4940747).
BC063893 - Homo sapiens cDNA clone IMAGE:30368489, partial cds.
BC053987 - Homo sapiens CXYorf1-related protein, mRNA (cDNA clone IMAGE:5814725), partial cds.
BC048328 - Homo sapiens WAS protein family homolog 2 pseudogene, mRNA (cDNA clone IMAGE:5192099).
BC027921 - Homo sapiens cDNA clone IMAGE:5225823, **** WARNING: chimeric clone ****.
BC063470 - Homo sapiens CXYorf1-related protein, mRNA (cDNA clone IMAGE:5211206).
AL137714 - Homo sapiens mRNA; cDNA DKFZp434K1323 (from clone DKFZp434K1323).
BX537637 - Homo sapiens mRNA; cDNA DKFZp686C24272 (from clone DKFZp686C24272).
AK024481 - Homo sapiens mRNA for FLJ00075 protein, partial cds.
AK092583 - Homo sapiens cDNA FLJ35264 fis, clone PROST2004817.
AX747611 - Sequence 1136 from Patent EP1308459.
AK056232 - Homo sapiens cDNA FLJ31670 fis, clone NT2RI2004984.
BC094698 - Homo sapiens cDNA clone IMAGE:30389644.
BC041177 - Homo sapiens CXYorf1-related protein, mRNA (cDNA clone IMAGE:6042646), partial cds.
AY217347 - Homo sapiens unknown mRNA.
JD043865 - Sequence 24889 from Patent EP1572962.
JD464022 - Sequence 445046 from Patent EP1572962.
JD464023 - Sequence 445047 from Patent EP1572962.
JD426250 - Sequence 407274 from Patent EP1572962.
JD319762 - Sequence 300786 from Patent EP1572962.
JD439184 - Sequence 420208 from Patent EP1572962.
AK289708 - Homo sapiens cDNA FLJ75027 complete cds, highly similar to Homo sapiens CXYorf1-related protein (MGC52000), mRNA.
JD386972 - Sequence 367996 from Patent EP1572962.
JD469492 - Sequence 450516 from Patent EP1572962.
AY341937 - Homo sapiens chromosome 9 CXYorf1 mRNA, complete cds.
JD371043 - Sequence 352067 from Patent EP1572962.
JD186991 - Sequence 168015 from Patent EP1572962.
JD178321 - Sequence 159345 from Patent EP1572962.
JD371044 - Sequence 352068 from Patent EP1572962.
JD492409 - Sequence 473433 from Patent EP1572962.
JD248147 - Sequence 229171 from Patent EP1572962.
JD044295 - Sequence 25319 from Patent EP1572962.
JD433165 - Sequence 414189 from Patent EP1572962.
JD055458 - Sequence 36482 from Patent EP1572962.
JD131561 - Sequence 112585 from Patent EP1572962.
JD129847 - Sequence 110871 from Patent EP1572962.
JD219312 - Sequence 200336 from Patent EP1572962.
JD546847 - Sequence 527871 from Patent EP1572962.
JD218460 - Sequence 199484 from Patent EP1572962.
JD131237 - Sequence 112261 from Patent EP1572962.
JD128091 - Sequence 109115 from Patent EP1572962.
JD422546 - Sequence 403570 from Patent EP1572962.
JD153435 - Sequence 134459 from Patent EP1572962.
JD367640 - Sequence 348664 from Patent EP1572962.
JD487131 - Sequence 468155 from Patent EP1572962.
JD493181 - Sequence 474205 from Patent EP1572962.
JD205712 - Sequence 186736 from Patent EP1572962.
JD425846 - Sequence 406870 from Patent EP1572962.
AK308566 - Homo sapiens cDNA, FLJ98607.
JD219639 - Sequence 200663 from Patent EP1572962.
JD078677 - Sequence 59701 from Patent EP1572962.
JD078676 - Sequence 59700 from Patent EP1572962.
JD253503 - Sequence 234527 from Patent EP1572962.
JD253504 - Sequence 234528 from Patent EP1572962.
JD159284 - Sequence 140308 from Patent EP1572962.
JD115871 - Sequence 96895 from Patent EP1572962.
JD456634 - Sequence 437658 from Patent EP1572962.
JD487879 - Sequence 468903 from Patent EP1572962.
JD080014 - Sequence 61038 from Patent EP1572962.
JD336830 - Sequence 317854 from Patent EP1572962.
JD444008 - Sequence 425032 from Patent EP1572962.
JD460507 - Sequence 441531 from Patent EP1572962.
AK302089 - Homo sapiens cDNA FLJ51139 complete cds.
AK308574 - Homo sapiens cDNA, FLJ98615.
JD389037 - Sequence 370061 from Patent EP1572962.
JD521711 - Sequence 502735 from Patent EP1572962.
JD383617 - Sequence 364641 from Patent EP1572962.
JD491045 - Sequence 472069 from Patent EP1572962.
JD318660 - Sequence 299684 from Patent EP1572962.
JD341280 - Sequence 322304 from Patent EP1572962.
JD220623 - Sequence 201647 from Patent EP1572962.
JD465423 - Sequence 446447 from Patent EP1572962.
JD515432 - Sequence 496456 from Patent EP1572962.
JD542452 - Sequence 523476 from Patent EP1572962.
JD507246 - Sequence 488270 from Patent EP1572962.
JD102852 - Sequence 83876 from Patent EP1572962.
AK309926 - Homo sapiens cDNA, FLJ99967.
JD042768 - Sequence 23792 from Patent EP1572962.
JD338329 - Sequence 319353 from Patent EP1572962.
JD406735 - Sequence 387759 from Patent EP1572962.
AK310121 - Homo sapiens cDNA, FLJ17163.
AK316487 - Homo sapiens cDNA, FLJ79386 complete cds.
JD455749 - Sequence 436773 from Patent EP1572962.
JD115443 - Sequence 96467 from Patent EP1572962.
JD365642 - Sequence 346666 from Patent EP1572962.
JD123346 - Sequence 104370 from Patent EP1572962.
JD054019 - Sequence 35043 from Patent EP1572962.
JD309150 - Sequence 290174 from Patent EP1572962.
AK310139 - Homo sapiens cDNA, FLJ17181.
JD114876 - Sequence 95900 from Patent EP1572962.
JD270338 - Sequence 251362 from Patent EP1572962.
JD392218 - Sequence 373242 from Patent EP1572962.
AK294377 - Homo sapiens cDNA FLJ52226 complete cds.
JD520988 - Sequence 502012 from Patent EP1572962.
CU690574 - Synthetic construct Homo sapiens gateway clone IMAGE:100021466 5' read FAM39B mRNA.
JD216409 - Sequence 197433 from Patent EP1572962.
JD164536 - Sequence 145560 from Patent EP1572962.
JD145347 - Sequence 126371 from Patent EP1572962.
AK300161 - Homo sapiens cDNA FLJ51084 complete cds.
JD493632 - Sequence 474656 from Patent EP1572962.
JD295896 - Sequence 276920 from Patent EP1572962.
JD273037 - Sequence 254061 from Patent EP1572962.
JD267962 - Sequence 248986 from Patent EP1572962.
JD090362 - Sequence 71386 from Patent EP1572962.
JD090361 - Sequence 71385 from Patent EP1572962.
JC506118 - Sequence 137 from Patent EP2733219.
JC506119 - Sequence 138 from Patent EP2733219.
JC506120 - Sequence 139 from Patent EP2733219.
JC506121 - Sequence 140 from Patent EP2733219.
JC506169 - Sequence 188 from Patent EP2733219.
JC506170 - Sequence 189 from Patent EP2733219.
JC506171 - Sequence 190 from Patent EP2733219.
JC506172 - Sequence 191 from Patent EP2733219.
JC506763 - Sequence 131 from Patent EP2733220.
JC737542 - Sequence 137 from Patent WO2014075911.
JC737543 - Sequence 138 from Patent WO2014075911.
JC737544 - Sequence 139 from Patent WO2014075911.
JC737545 - Sequence 140 from Patent WO2014075911.
JC737593 - Sequence 188 from Patent WO2014075911.
JC737594 - Sequence 189 from Patent WO2014075911.
JC737595 - Sequence 190 from Patent WO2014075911.
JC737596 - Sequence 191 from Patent WO2014075911.
JC737875 - Sequence 131 from Patent WO2014075939.
JC506791 - Sequence 159 from Patent EP2733220.
JC737903 - Sequence 159 from Patent WO2014075939.
JD452319 - Sequence 433343 from Patent EP1572962.
JD467831 - Sequence 448855 from Patent EP1572962.
JD338175 - Sequence 319199 from Patent EP1572962.
JD544421 - Sequence 525445 from Patent EP1572962.
AK308540 - Homo sapiens cDNA, FLJ98581.
JD283908 - Sequence 264932 from Patent EP1572962.
JD405726 - Sequence 386750 from Patent EP1572962.
JD405727 - Sequence 386751 from Patent EP1572962.
JD127621 - Sequence 108645 from Patent EP1572962.
JD408497 - Sequence 389521 from Patent EP1572962.
JD100811 - Sequence 81835 from Patent EP1572962.
JD461476 - Sequence 442500 from Patent EP1572962.
JD170368 - Sequence 151392 from Patent EP1572962.
JD519949 - Sequence 500973 from Patent EP1572962.
JD042751 - Sequence 23775 from Patent EP1572962.
JD098685 - Sequence 79709 from Patent EP1572962.
JD151500 - Sequence 132524 from Patent EP1572962.
JD540282 - Sequence 521306 from Patent EP1572962.
JD442700 - Sequence 423724 from Patent EP1572962.
JD370682 - Sequence 351706 from Patent EP1572962.
AK024448 - Homo sapiens mRNA for FLJ00038 protein, partial cds.
JD488237 - Sequence 469261 from Patent EP1572962.
JD193028 - Sequence 174052 from Patent EP1572962.
JD172831 - Sequence 153855 from Patent EP1572962.
AK311358 - Homo sapiens cDNA, FLJ18400.
MB406866 - WO 2019159884-A/356: Kit, device, and method for detection of dementia.
MB407257 - WO 2019159884-A/747: Kit, device, and method for detection of dementia.
MB407258 - WO 2019159884-A/748: Kit, device, and method for detection of dementia.
MB407259 - WO 2019159884-A/749: Kit, device, and method for detection of dementia.
MB407260 - WO 2019159884-A/750: Kit, device, and method for detection of dementia.
MB407773 - WO 2019159884-A/1263: Kit, device, and method for detection of dementia.

-  Other Names for This Gene
  Alternate Gene Symbols: AL137714
UCSC ID: uc009viw.2
RefSeq Accession: NR_024540

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: AL137714.1
exon count: 7CDS single in 3' UTR: no RNA size: 3536
ORF size: 0CDS single in intron: no Alignment % ID: 98.82
txCdsPredict score: 132.50frame shift in genome: no % Coverage: 95.36
has start codon: no stop codon in genome: no # of Alignments: 4
has end codon: no retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 2200# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.