Human Gene DYDC1 (uc031pwj.1)
  Description: Homo sapiens DPY30 domain containing 1 (DYDC1), transcript variant 2, mRNA.
RefSeq Summary (NM_001269053): This gene encodes a member of a family of proteins that contains a DPY30 domain. The encoded protein is involved in acrosome formation during spermatid development. This gene locus overlaps with a closely related gene on the opposite strand. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2012].
Transcript (Including UTRs)
   Position: hg19 chr10:82,095,861-82,116,514 Size: 20,654 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr10:82,095,912-82,112,357 Size: 16,446 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:82,095,861-82,116,514)mRNA (may differ from genome)Protein (177 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
H-INVHGNCHPRDLynxMalacardsMGI
neXtProtOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DYDC1_HUMAN
DESCRIPTION: RecName: Full=DPY30 domain-containing protein 1;
FUNCTION: Plays a crucial role during acrosome biogenesis.
SUBUNIT: Interacts with SH3GL3.
TISSUE SPECIFICITY: Brain and testis. Accumulates during late stage of spermiogenesis.
SIMILARITY: Belongs to the dpy-30 family.
CAUTION: Sequence AAQ84766 was incorrectly indicated as originating from mouse.
SEQUENCE CAUTION: Sequence=BAC86339.1; Type=Miscellaneous discrepancy; Note=Intron retention;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): DYDC1
CDC HuGE Published Literature: DYDC1

-  MalaCards Disease Associations
  MalaCards Gene Search: DYDC1
Diseases sorted by gene-association score: arrhythmogenic right ventricular cardiomyopathy (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 57.48 RPKM in Testis
Total median expression: 57.62 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -17.9056-0.320 Picture PostScript Text
3' UTR -4.8051-0.094 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007858 - Dpy-30_motif

Pfam Domains:
PF05186 - Dpy-30 motif

ModBase Predicted Comparative 3D Structure on Q8WWB3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0042800 histone methyltransferase activity (H3-K4 specific)

Biological Process:
GO:0006348 chromatin silencing at telomere
GO:0051568 histone H3-K4 methylation

Cellular Component:
GO:0000781 chromosome, telomeric region
GO:0048188 Set1C/COMPASS complex


-  Descriptions from all associated GenBank mRNAs
  BC019250 - Homo sapiens DPY30 domain containing 1, mRNA (cDNA clone MGC:26601 IMAGE:4828878), complete cds.
AK125908 - Homo sapiens cDNA FLJ43920 fis, clone TESTI4012086.
EU831814 - Synthetic construct Homo sapiens clone HAIB:100066843; DKFZo008F1021 DPY30 domain containing 1 protein (DYDC1) gene, encodes complete protein.
EU831891 - Synthetic construct Homo sapiens clone HAIB:100066920; DKFZo004F1022 DPY30 domain containing 1 protein (DYDC1) gene, encodes complete protein.
AK292542 - Homo sapiens cDNA FLJ78629 complete cds.
CU676406 - Synthetic construct Homo sapiens gateway clone IMAGE:100020166 5' read DYDC1 mRNA.

-  Other Names for This Gene
  Alternate Gene Symbols: DPY30D1, DYDC1_HUMAN, NM_001269053, NP_620167, Q5QP03, Q5QP04, Q6WNP4, Q6ZU87, Q8WWB3, RSD-9, RSD9, uc009xsr.1
UCSC ID: uc031pwj.1
RefSeq Accession: NM_001269053
Protein: Q8WWB3 (aka DYDC1_HUMAN)
CCDS: CCDS7366.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001269053.1
exon count: 7CDS single in 3' UTR: no RNA size: 664
ORF size: 534CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1268.00frame shift in genome: no % Coverage: 96.54
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.