Human Gene CRYBB1 (uc003acy.1)
  Description: Homo sapiens crystallin, beta B1 (CRYBB1), mRNA.
RefSeq Summary (NM_001887): Crystallins are separated into two classes: taxon-specific, or enzyme, and ubiquitous. The latter class constitutes the major proteins of vertebrate eye lens and maintains the transparency and refractive index of the lens. Since lens central fiber cells lose their nuclei during development, these crystallins are made and then retained throughout life, making them extremely stable proteins. Mammalian lens crystallins are divided into alpha, beta, and gamma families; beta and gamma crystallins are also considered as a superfamily. Alpha and beta families are further divided into acidic and basic groups. Seven protein regions exist in crystallins: four homologous motifs, a connecting peptide, and N- and C-terminal extensions. Beta-crystallins, the most heterogeneous, differ by the presence of the C-terminal extension (present in the basic group, none in the acidic group). Beta-crystallins form aggregates of different sizes and are able to self-associate to form dimers or to form heterodimers with other beta-crystallins. This gene, a beta basic group member, undergoes extensive cleavage at its N-terminal extension during lens maturation. It is also a member of a gene cluster with beta-A4, beta-B2, and beta-B3. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr22:26,995,362-27,013,991 Size: 18,630 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr22:26,995,454-27,012,283 Size: 16,830 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:26,995,362-27,013,991)mRNA (may differ from genome)Protein (252 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedTreefamUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CRBB1_HUMAN
DESCRIPTION: RecName: Full=Beta-crystallin B1; AltName: Full=Beta-B1 crystallin;
FUNCTION: Crystallins are the dominant structural components of the vertebrate eye lens.
SUBUNIT: Homo/heterodimer, or complexes of higher-order. The structure of beta-crystallin oligomers seems to be stabilized through interactions between the N-terminal arms.
DOMAIN: Has a two-domain beta-structure, folded into four very similar Greek key motifs.
PTM: Specific cleavages in the N-terminal arm occur during lens maturation and give rise to truncated forms, leading to impaired oligomerization and protein insolubilization.
MASS SPECTROMETRY: Mass=27941; Mass_error=6; Method=Electrospray; Range=2-252; Source=PubMed:8626774;
DISEASE: Defects in CRYBB1 are the cause of cataract congenital nuclear autosomal recessive type 3 (CATCN3) [MIM:611544]. A congenital cataract affecting the central nucleus of the eye. Nuclear cataracts are often not highly visually significant. The density of the opacities varies greatly from fine dots to a dense, white and chalk-like, central cataract. The condition is usually bilateral. Nuclear cataracts are often combined with opacified cortical fibers encircling the nuclear opacity, which are referred to as cortical riders.
DISEASE: Defects in CRYBB1 are a cause of cataract-microcornea syndrome (CAMIS) [MIM:116150]. An ocular disorder characterized by the association of congenital cataract and microcornea without any other systemic anomaly or dysmorphism. Clinical findings include a corneal diameter inferior to 10 mm in both meridians in an otherwise normal eye, and an inherited cataract, which is most often bilateral posterior polar with opacification in the lens periphery. The cataract progresses to form a total cataract after visual maturity has been achieved, requiring cataract extraction in the first to third decade of life. Microcornea-cataract syndrome can be associated with other rare ocular manifestations, including myopia, iris coloboma, sclerocornea and Peters anomaly. Transmission is in most cases autosomal dominant, but cases of autosomal recessive transmission have recently been described.
SIMILARITY: Belongs to the beta/gamma-crystallin family.
SIMILARITY: Contains 4 beta/gamma crystallin 'Greek key' domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CRYBB1
Diseases sorted by gene-association score: cataract 17, multiple types* (1329), cataract microcornea syndrome* (260), cataract 30, pulverulent* (124), early-onset nuclear cataract* (90), cataract (14), microphthalmia, isolated 1 (8), cataract 9, multiple types (8), scleral disease (6), lens disease (4), glaucoma 1, open angle, e (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.33 RPKM in Spleen
Total median expression: 15.62 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -26.5070-0.379 Picture PostScript Text
3' UTR -3.0592-0.033 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001064 - Beta/gamma_crystallin
IPR011024 - G_crystallin-rel

Pfam Domains:
PF00030 - Beta/Gamma crystallin

SCOP Domains:
49695 - gamma-Crystallin-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1OKI - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P53674
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
  Ensembl   
  Protein Sequence   
  Alignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005212 structural constituent of eye lens
GO:0005515 protein binding

Biological Process:
GO:0007601 visual perception


-  Descriptions from all associated GenBank mRNAs
  BC036790 - Homo sapiens crystallin, beta B1, mRNA (cDNA clone MGC:45992 IMAGE:5752689), complete cds.
U35340 - Homo sapiens beta B1-crystallin mRNA, complete cds.
CR456425 - Homo sapiens CRYBB1 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.CRYBB1).
CU012986 - Homo sapiens CRYBB1, mRNA (cDNA clone IMAGE:100000147), complete cds, with stop codon, in Gateway system.
KJ890973 - Synthetic construct Homo sapiens clone ccsbBroadEn_00367 CRYBB1 gene, encodes complete protein.
KR710903 - Synthetic construct Homo sapiens clone CCSBHm_00018104 CRYBB1 (CRYBB1) mRNA, encodes complete protein.
CU691418 - Synthetic construct Homo sapiens gateway clone IMAGE:100023279 5' read CRYBB1 mRNA.
AB528113 - Synthetic construct DNA, clone: pF1KE0496, Homo sapiens CRYBB1 gene for crystallin, beta B1, without stop codon, in Flexi system.
CU013274 - Homo sapiens CRYBB1, mRNA (cDNA clone IMAGE:100000051), complete cds, without stop codon, in Gateway system.
JD403099 - Sequence 384123 from Patent EP1572962.
JD292748 - Sequence 273772 from Patent EP1572962.
JD193975 - Sequence 174999 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: CRBB1_HUMAN, NM_001887, NP_001878, P53674
UCSC ID: uc003acy.1
RefSeq Accession: NM_001887
Protein: P53674 (aka CRBB1_HUMAN or CRB1_HUMAN)
CCDS: CCDS13840.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001887.3
exon count: 6CDS single in 3' UTR: no RNA size: 921
ORF size: 759CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1382.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.