Human Gene RP11-231C14.4 (uc021tgb.1)
Description: SubName: Full=Nuclear pore complex-interacting protein-like 3; Flags: Fragment;
Transcript (Including UTRs)
Position: hg19 chr16:29,497,001-29,516,913 Size: 19,913 Total Exon Count: 7 Strand: -
Coding Region
Position: hg19 chr16:29,497,002-29,516,913 Size: 19,912 Coding Exon Count: 7
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: F5H4N5_HUMAN
DESCRIPTION: SubName: Full=Nuclear pore complex-interacting protein-like 3; Flags: Fragment;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.
Primer design for this transcript
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR009443 - NPIP
Pfam Domains: PF06409 - Nuclear pore complex interacting protein (NPIP)
ModBase Predicted Comparative 3D Structure on F5H4N5
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
CU690320 - Synthetic construct Homo sapiens gateway clone IMAGE:100018410 5' read LOC23117 mRNA.JD148745 - Sequence 129769 from Patent EP1572962.KF175184 - Homo sapiens clone 20 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175178 - Homo sapiens clone 14 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175193 - Homo sapiens clone 29 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175194 - Homo sapiens clone 30 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175179 - Homo sapiens clone 15 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175180 - Homo sapiens clone 16 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175182 - Homo sapiens clone 18 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175185 - Homo sapiens clone 21 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175186 - Homo sapiens clone 22 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175187 - Homo sapiens clone 23 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175190 - Homo sapiens clone 26 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175201 - Homo sapiens clone 37 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175188 - Homo sapiens clone 24 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175189 - Homo sapiens clone 25 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175191 - Homo sapiens clone 27 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175192 - Homo sapiens clone 28 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175195 - Homo sapiens clone 31 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175196 - Homo sapiens clone 32 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175197 - Homo sapiens clone 33 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175202 - Homo sapiens clone 38 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175218 - Homo sapiens clone p_11 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.KF175216 - Homo sapiens clone p_9 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.KF175198 - Homo sapiens clone 34 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175199 - Homo sapiens clone 35 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175200 - Homo sapiens clone 36 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175203 - Homo sapiens clone 39 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175205 - Homo sapiens clone 41 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175206 - Homo sapiens clone 42 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175215 - Homo sapiens clone p_8 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.JD318007 - Sequence 299031 from Patent EP1572962.KF175181 - Homo sapiens clone 17 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.AK308629 - Homo sapiens cDNA, FLJ98670.DQ597666 - Homo sapiens piRNA piR-35732, complete sequence.DQ586845 - Homo sapiens piRNA piR-53957, complete sequence.JD444458 - Sequence 425482 from Patent EP1572962.JD374720 - Sequence 355744 from Patent EP1572962.JD488661 - Sequence 469685 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: CU690320, F5H4N5, F5H4N5_HUMAN, NPIPL3UCSC ID: uc021tgb.1Representative RNA: CU690320
Protein: F5H4N5
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
CU690320.1
exon count:
7 CDS single in 3' UTR:
no
RNA size:
1168
ORF size:
795 CDS single in intron:
no
Alignment % ID:
98.66
txCdsPredict score:
945.00 frame shift in genome:
no
% Coverage:
68.15
has start codon:
yes
stop codon in genome:
no
# of Alignments:
5
has end codon:
no
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.