Human Gene RP11-231C14.4 (uc021tgb.1)
  Description: SubName: Full=Nuclear pore complex-interacting protein-like 3; Flags: Fragment;
Transcript (Including UTRs)
   Position: hg19 chr16:29,497,001-29,516,913 Size: 19,913 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr16:29,497,002-29,516,913 Size: 19,912 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersGene AllelesRNA-Seq Expression
Microarray ExpressionProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Model InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:29,497,001-29,516,913)mRNA (may differ from genome)Protein (265 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldEnsembl
ExonPrimerGeneCardsH-INVLynxMGIPubMed
UniProtKB

-  Comments and Description Text from UniProtKB
  ID: F5H4N5_HUMAN
DESCRIPTION: SubName: Full=Nuclear pore complex-interacting protein-like 3; Flags: Fragment;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.30 RPKM in Thyroid
Total median expression: 51.10 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009443 - NPIP

Pfam Domains:
PF06409 - Nuclear pore complex interacting protein (NPIP)

ModBase Predicted Comparative 3D Structure on F5H4N5
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Cellular Component:
GO:0005654 nucleoplasm


-  Descriptions from all associated GenBank mRNAs
  CU690320 - Synthetic construct Homo sapiens gateway clone IMAGE:100018410 5' read LOC23117 mRNA.
JD148745 - Sequence 129769 from Patent EP1572962.
KF175184 - Homo sapiens clone 20 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175178 - Homo sapiens clone 14 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175193 - Homo sapiens clone 29 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175194 - Homo sapiens clone 30 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175179 - Homo sapiens clone 15 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175180 - Homo sapiens clone 16 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175182 - Homo sapiens clone 18 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175185 - Homo sapiens clone 21 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175186 - Homo sapiens clone 22 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175187 - Homo sapiens clone 23 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175190 - Homo sapiens clone 26 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175201 - Homo sapiens clone 37 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175188 - Homo sapiens clone 24 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175189 - Homo sapiens clone 25 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175191 - Homo sapiens clone 27 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175192 - Homo sapiens clone 28 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175195 - Homo sapiens clone 31 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175196 - Homo sapiens clone 32 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175197 - Homo sapiens clone 33 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175202 - Homo sapiens clone 38 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175218 - Homo sapiens clone p_11 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.
KF175216 - Homo sapiens clone p_9 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.
KF175198 - Homo sapiens clone 34 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175199 - Homo sapiens clone 35 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175200 - Homo sapiens clone 36 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175203 - Homo sapiens clone 39 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175205 - Homo sapiens clone 41 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175206 - Homo sapiens clone 42 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
KF175215 - Homo sapiens clone p_8 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.
JD318007 - Sequence 299031 from Patent EP1572962.
KF175181 - Homo sapiens clone 17 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.
AK308629 - Homo sapiens cDNA, FLJ98670.
DQ597666 - Homo sapiens piRNA piR-35732, complete sequence.
DQ586845 - Homo sapiens piRNA piR-53957, complete sequence.
JD444458 - Sequence 425482 from Patent EP1572962.
JD374720 - Sequence 355744 from Patent EP1572962.
JD488661 - Sequence 469685 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: CU690320, F5H4N5, F5H4N5_HUMAN, NPIPL3
UCSC ID: uc021tgb.1
Representative RNA: CU690320
Protein: F5H4N5

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: CU690320.1
exon count: 7CDS single in 3' UTR: no RNA size: 1168
ORF size: 795CDS single in intron: no Alignment % ID: 98.66
txCdsPredict score: 945.00frame shift in genome: no % Coverage: 68.15
has start codon: yes stop codon in genome: no # of Alignments: 5
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.