Human Gene ARMCX6 (uc004ehy.3)
Description: Homo sapiens armadillo repeat containing, X-linked 6 (ARMCX6), transcript variant 2, mRNA.
Transcript (Including UTRs)
Position: hg19 chrX:100,870,108-100,872,991 Size: 2,884 Total Exon Count: 2 Strand: -
Coding Region
Position: hg19 chrX:100,870,708-100,871,610 Size: 903 Coding Exon Count: 1
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: ARMX6_HUMAN
DESCRIPTION: RecName: Full=Protein ARMCX6;
SUBCELLULAR LOCATION: Membrane; Single-pass membrane protein (Potential).SEQUENCE CAUTION: Sequence=BAA91387.1; Type=Erroneous initiation;
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR006911 - ARM-rpt_dom
Pfam Domains: PF04826 - Armadillo-like
ModBase Predicted Comparative 3D Structure on Q7L4S7
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
LF211662 - JP 2014500723-A/19165: Polycomb-Associated Non-Coding RNAs.LF211660 - JP 2014500723-A/19163: Polycomb-Associated Non-Coding RNAs.LF385351 - JP 2014500723-A/192854: Polycomb-Associated Non-Coding RNAs.AK097018 - Homo sapiens cDNA FLJ39699 fis, clone SMINT2011567, weakly similar to Homo sapiens mRNA for ALEX1.L20773 - Homo sapiens mRNA in the region near the btk gene involved in a-gamma-globulinemia.BC007677 - Homo sapiens armadillo repeat containing, X-linked 6, mRNA (cDNA clone MGC:3437 IMAGE:3609980), complete cds.AK000818 - Homo sapiens cDNA FLJ20811 fis, clone ADSE01435.LF382266 - JP 2014500723-A/189769: Polycomb-Associated Non-Coding RNAs.LF382265 - JP 2014500723-A/189768: Polycomb-Associated Non-Coding RNAs.JD528032 - Sequence 509056 from Patent EP1572962.JD079789 - Sequence 60813 from Patent EP1572962.JD186230 - Sequence 167254 from Patent EP1572962.LF382267 - JP 2014500723-A/189770: Polycomb-Associated Non-Coding RNAs.LF382264 - JP 2014500723-A/189767: Polycomb-Associated Non-Coding RNAs.JD408056 - Sequence 389080 from Patent EP1572962.JD163149 - Sequence 144173 from Patent EP1572962.JD098093 - Sequence 79117 from Patent EP1572962.JD367336 - Sequence 348360 from Patent EP1572962.JD076847 - Sequence 57871 from Patent EP1572962.JD429428 - Sequence 410452 from Patent EP1572962.JD085574 - Sequence 66598 from Patent EP1572962.JD037854 - Sequence 18878 from Patent EP1572962.HQ447369 - Synthetic construct Homo sapiens clone IMAGE:100070690; CCSB004777_03 armadillo repeat containing, X-linked 6 (ARMCX6) gene, encodes complete protein.KJ894025 - Synthetic construct Homo sapiens clone ccsbBroadEn_03419 ARMCX6 gene, encodes complete protein.CU675753 - Synthetic construct Homo sapiens gateway clone IMAGE:100018763 5' read ARMCX6 mRNA.LF382268 - JP 2014500723-A/189771: Polycomb-Associated Non-Coding RNAs.LF382262 - JP 2014500723-A/189765: Polycomb-Associated Non-Coding RNAs.LF382269 - JP 2014500723-A/189772: Polycomb-Associated Non-Coding RNAs.LF382270 - JP 2014500723-A/189773: Polycomb-Associated Non-Coding RNAs.LF382271 - JP 2014500723-A/189774: Polycomb-Associated Non-Coding RNAs.JD498157 - Sequence 479181 from Patent EP1572962.JD178396 - Sequence 159420 from Patent EP1572962.JD062524 - Sequence 43548 from Patent EP1572962.JD265758 - Sequence 246782 from Patent EP1572962.LF382272 - JP 2014500723-A/189775: Polycomb-Associated Non-Coding RNAs.JD459105 - Sequence 440129 from Patent EP1572962.JD121047 - Sequence 102071 from Patent EP1572962.JD123091 - Sequence 104115 from Patent EP1572962.JD392130 - Sequence 373154 from Patent EP1572962.JD512184 - Sequence 493208 from Patent EP1572962.JD203399 - Sequence 184423 from Patent EP1572962.JD460345 - Sequence 441369 from Patent EP1572962.MA620928 - JP 2018138019-A/192854: Polycomb-Associated Non-Coding RNAs.MA447239 - JP 2018138019-A/19165: Polycomb-Associated Non-Coding RNAs.MA447237 - JP 2018138019-A/19163: Polycomb-Associated Non-Coding RNAs.MA617843 - JP 2018138019-A/189769: Polycomb-Associated Non-Coding RNAs.MA617842 - JP 2018138019-A/189768: Polycomb-Associated Non-Coding RNAs.MA617844 - JP 2018138019-A/189770: Polycomb-Associated Non-Coding RNAs.MA617841 - JP 2018138019-A/189767: Polycomb-Associated Non-Coding RNAs.MA617845 - JP 2018138019-A/189771: Polycomb-Associated Non-Coding RNAs.MA617839 - JP 2018138019-A/189765: Polycomb-Associated Non-Coding RNAs.MA617846 - JP 2018138019-A/189772: Polycomb-Associated Non-Coding RNAs.MA617847 - JP 2018138019-A/189773: Polycomb-Associated Non-Coding RNAs.MA617848 - JP 2018138019-A/189774: Polycomb-Associated Non-Coding RNAs.MA617849 - JP 2018138019-A/189775: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: ARMX6_HUMAN, NM_001009584, NP_061880, Q7L4S7, Q9NWJ3UCSC ID: uc004ehy.3RefSeq Accession: NM_001009584
Protein: Q7L4S7
(aka ARMX6_HUMAN)
CCDS: CCDS14488.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_001009584.1
exon count:
2 CDS single in 3' UTR:
no
RNA size:
1783
ORF size:
903 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
2006.00 frame shift in genome:
no
% Coverage:
99.05
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
yes
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
1554 # strange splices:
0
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Methods, Credits, and Use Restrictions
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